Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L09
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38920|MLH1_YEAST MUTL protein homolog 1 (DNA mismatch r... 30 1.7
sp|P38327|YB82_YEAST Hypothetical 12.7 kDa protein in MCX1-... 30 2.3
sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330 28 5.1
sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase 28 6.6
sp|Q9ZLR4|Y567_HELPJ Hypothetical UPF0118 protein JHP0514 28 6.6
sp|Q9WTT5|RNAS1_ACOCA Ribonuclease pancreatic precursor (RN... 28 8.6
>sp|P38920|MLH1_YEAST MUTL protein homolog 1 (DNA mismatch repair protein MLH1)
Length = 769
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 155 FVLCYGSVCYICSYTFWSYLE*NF--VNLETSNVGDKLTCFILL 280
F++ YGSVCY Y NF +NL+++NV D + + LL
Sbjct: 558 FLIDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNLL 601
>sp|P38327|YB82_YEAST Hypothetical 12.7 kDa protein in MCX1-PBP2 intergenic region
Length = 119
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -3
Query: 215 PSKTKMCMSRYSTRYHSTKRNCPSAHLVHILALTSSFRTLSICSKDVITSLVSSDFNVLQ 36
P+ ++ C++++S R +++ L++SFR + S +SLVSS F +L
Sbjct: 20 PTISEACLTKHSIRKCTSEGTLSGESWSLSEWLSASFRATRLISASSCSSLVSSPFFLLS 79
Query: 35 TI*EIQTAI 9
+ E T +
Sbjct: 80 VLGETSTVV 88
>sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330
Length = 459
Score = 28.5 bits (62), Expect = 5.1
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = -3
Query: 131 HILALTSSFRTLSICSKDVITSLV 60
HI+A+ ++R +++C+ +VIT+LV
Sbjct: 76 HIIAVEGNYRGVALCATEVITNLV 99
>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
Length = 385
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 50 NLKKLRM*LHLLNKLITS*MKKLKRECGPDVPM---DNF 157
N+ L++ + ++N L+ +++KRE PD+P+ DNF
Sbjct: 220 NIFNLKILVPMVNSLLKKRFEEIKREVAPDLPITIFDNF 258
>sp|Q9ZLR4|Y567_HELPJ Hypothetical UPF0118 protein JHP0514
Length = 349
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 224 FVNLETSNVGDKLTCFILLLSIMLIK--F*MFSFLNEIFFVNLNKL 355
F+N SNV C ++L S++++ F ++ N IF +N KL
Sbjct: 45 FLNKRFSNVISSFLCVLVLASVVIVPLYFIVYKGSNVIFEINFEKL 90
>sp|Q9WTT5|RNAS1_ACOCA Ribonuclease pancreatic precursor (RNase 1) (RNase A)
Length = 149
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 254 RQHLKSRGSQSSTPSKTKMCMSRYSTRYHSTKR 156
RQH+ S GS SS+P+ M R S KR
Sbjct: 35 RQHMDSAGSSSSSPTYCNQMMKRREMTKGSCKR 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,280,677
Number of Sequences: 369166
Number of extensions: 625844
Number of successful extensions: 1490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)