Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_E07
(329 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86WR7|CJ047_HUMAN Protein C10orf47 30 1.3
sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase 30 1.3
sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330 28 4.9
sp|P00723|BGAL_KLULA Beta-galactosidase (Lactase) 28 6.4
sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR) 28 6.4
>sp|Q86WR7|CJ047_HUMAN Protein C10orf47
Length = 435
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 18 ETKDVITSFEQIDNVLNEEVKARMWTRCADGQFRLCYGSVCYICSYTFWSYWSRTCEPRD 197
E KDV+ FE+ + L+E+ + + LC G VC +CS + S EP D
Sbjct: 57 EEKDVLLFFEETIDSLDEDFEEPV----------LCDGGVCCLCSPSLEESTSSPSEPED 106
>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
Length = 385
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +1
Query: 22 LRM*LHLLNKLITS*MKKLKRECGPDVPM---DNFVCAMVACA 141
L++ + ++N L+ +++KRE PD+P+ DNF ++AC+
Sbjct: 224 LKILVPMVNSLLKKRFEEIKREVAPDLPITIFDNFSYEVMACS 266
>sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330
Length = 459
Score = 28.5 bits (62), Expect = 4.9
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = -2
Query: 91 HILALTSSFRTLSICSKDVITSLV 20
HI+A+ ++R +++C+ +VIT+LV
Sbjct: 76 HIIAVEGNYRGVALCATEVITNLV 99
>sp|P00723|BGAL_KLULA Beta-galactosidase (Lactase)
Length = 1025
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 150 SYTFWSYWSRTCEPRDFKCWR*VNM 224
S TFW + EPRDFK W+ N+
Sbjct: 785 SITFWRPPTNNDEPRDFKNWKKYNI 809
>sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR)
Length = 304
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 138 TRYHSTNEIVHRHIWSTFSL*LLHSG 61
T Y + E HR +W TF+L +L SG
Sbjct: 34 TEYQTLGETGHRTLWVTFALMVLSSG 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,883,488
Number of Sequences: 369166
Number of extensions: 603327
Number of successful extensions: 1614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)