Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_G12
(343 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase 33 0.27
sp|P37630|YHIM_ECOLI Inner membrane protein yhiM 30 2.3
sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330 28 5.0
sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR) 28 6.6
sp|P98163|YL_DROME Putative vitellogenin receptor precursor... 28 8.6
>sp|Q8D2H4|LPXB_WIGBR Lipid-A-disaccharide synthase
Length = 385
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +1
Query: 31 NLKKLRM*LHLLNKLITS*MKKLKRECGPDVPM---DNFVCAMVACAIHAYTHFGLTGVE 201
N+ L++ + ++N L+ +++KRE PD+P+ DNF ++AC+ + G +E
Sbjct: 220 NIFNLKILVPMVNSLLKKRFEEIKREVAPDLPITIFDNFSYEVMACSDFSIVTSGTATLE 279
>sp|P37630|YHIM_ECOLI Inner membrane protein yhiM
Length = 364
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 54 ITSFEQIDNLLNEEVKARMWTRCADGQFRLCYGSVCYTCLYTFW---SYWGRTC 206
IT + I L++ + AR+ A G +C G +CY+ W W RTC
Sbjct: 250 ITVLQGIYVLVSSDASARL----APGIILICLGMICYSIFSKVWLLALVWRRTC 299
>sp|O80948|MB23_ARATH Myrosinase binding protein-like At2g39330
Length = 459
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = -1
Query: 112 HILALTSSFRRLSICSKDVITSLV 41
HI+A+ ++R +++C+ +VIT+LV
Sbjct: 76 HIIAVEGNYRGVALCATEVITNLV 99
>sp|Q9UW81|NOP1_NEUCR Opsin-1 (NR)
Length = 304
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 159 TRYHSTNEIVHRHIWSTFSL*LLHSG 82
T Y + E HR +W TF+L +L SG
Sbjct: 34 TEYQTLGETGHRTLWVTFALMVLSSG 59
>sp|P98163|YL_DROME Putative vitellogenin receptor precursor (Yolkless protein) (YL)
Length = 1984
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 84 LNEEVKARMWTRCADGQFRLCYGSVCYTCLYTFWSYWGRTCEPRDFKC 227
L V+ T C G+ G VC +Y F GR C R+F+C
Sbjct: 1258 LPSTVRCNGTTECPRGEDEADCGDVC--SIYEFKCRSGRECIRREFRC 1303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,170,665
Number of Sequences: 369166
Number of extensions: 692410
Number of successful extensions: 1717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)