Planaria EST Database

DrC_00823

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00823
         (594 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02543|RL18A_HUMAN  60S ribosomal protein L18a                 234   2e-61
sp|O57561|RL18A_SALSA  60S ribosomal protein L18a                 233   2e-61
sp|P62718|RL18A_RAT  60S ribosomal protein L18a >gi|50403588...   232   5e-61
sp|Q7ZWJ4|RL18A_BRARE  60S ribosomal protein L18a                 228   9e-60
sp|Q90YU9|RL18A_ICTPU  60S ribosomal protein L18a                 227   1e-59
sp|Q8WQI7|RL18A_SPOFR  60S ribosomal protein L18a                 216   4e-56
sp|P41093|RL18A_DROME  60S ribosomal protein L18a                 215   8e-56
sp|O44480|RL18A_CAEEL  60S ribosomal protein L18a                 182   4e-46
sp|P51418|RL18A_ARATH  60S ribosomal protein L18a-1               174   2e-43
sp|P47913|RL20_YEAST  60S ribosomal protein L20 (L18A)            169   5e-42

>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
          Length = 176

 Score =  234 bits (596), Expect = 2e-61
 Identities = 110/176 (62%), Positives = 133/176 (75%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           MKA+GTL+E+KV GR LPT K   P  Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GE
Sbjct: 1   MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
           IV C ++ +K P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR
Sbjct: 61  IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             SI ++ V EIAASKCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
          Length = 176

 Score =  233 bits (595), Expect = 2e-61
 Identities = 107/176 (60%), Positives = 134/176 (76%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           MKA+GTL+E+KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE
Sbjct: 1   MKASGTLREYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
            V C  +H+K P  VKNFG+W++  SRSG HNMY+EYRDLT  +AVTQ Y++M ARHRAR
Sbjct: 61  TVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             SIH++ V EIAA+KCRRP +K  HDSK+ FPL   + +  H PRF T RP T F
Sbjct: 121 AHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176

>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
 sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
          Length = 176

 Score =  232 bits (592), Expect = 5e-61
 Identities = 109/176 (61%), Positives = 132/176 (75%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           MKA+GTL+E+KV GR LPT K   P  Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GE
Sbjct: 1   MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
           IV C ++ +K P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR
Sbjct: 61  IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             SI ++ V EIAA KCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
          Length = 176

 Score =  228 bits (581), Expect = 9e-60
 Identities = 106/176 (60%), Positives = 133/176 (75%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           MKA+GTL+E+KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GE
Sbjct: 1   MKASGTLREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
           IV C  + +K P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR
Sbjct: 61  IVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             +I ++ V  IAA+KCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 121 AHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
          Length = 176

 Score =  227 bits (579), Expect = 1e-59
 Identities = 105/176 (59%), Positives = 132/176 (75%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           MKA+GTL+E+KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE
Sbjct: 1   MKASGTLREYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
            V C  +H++ P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR
Sbjct: 61  TVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             +I ++ V  IAA+KCRR  +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 121 AHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176

>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
          Length = 177

 Score =  216 bits (549), Expect = 4e-56
 Identities = 99/176 (56%), Positives = 129/176 (73%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           MKA G LKE++V GR+LP++ +P P  Y+MRIF+PD + AKSR+WYF+RQLKK KK  GE
Sbjct: 1   MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
           IV  +EI +K P  +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR
Sbjct: 61  IVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             SI +I V  I AS CRRP +K  H+S + FPL + ++ +     FA  RP+T F
Sbjct: 121 AHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176

>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
          Length = 177

 Score =  215 bits (547), Expect = 8e-56
 Identities = 98/176 (55%), Positives = 131/176 (74%)
 Frame = +1

Query: 37  MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           M+A G LKE++V GR+LP++K+P    Y+MRIFAPDN+ AKSR+WYF+RQLKK KK  GE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
           IV  K++++  P  +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
             SI +I V+ I A+K RR H+K  HDSK+ FPL + ++   ++  F+  +P T F
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176

>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
          Length = 180

 Score =  182 bits (463), Expect = 4e-46
 Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
 Frame = +1

Query: 40  KATG-TLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 216
           KA G TL E+ V GR++PT+K+P    ++M+IFA ++V AKSR+WYF+  L+++KK NGE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 217 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 396
           I+  K++ +K P TVKN+G+W+KY SR+G HNMY+EYRD T   AVTQ Y++M ARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 397 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
              IH++ V  + A   +R  +K  HD+K+ FPL   + K  +   F T+R  T F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179

>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
          Length = 178

 Score =  174 bits (440), Expect = 2e-43
 Identities = 76/146 (52%), Positives = 106/146 (72%)
 Frame = +1

Query: 61  EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 240
           +++V GR LPT+KD  P  Y+M+++A + V AKS++WYF+R+LKK+KK NG+++   EI+
Sbjct: 8   QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67

Query: 241 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 420
           +K PTT+KNFGIW++Y SR+G HNMYKEYRD T   AV Q+Y EMA+RHR R   I +I 
Sbjct: 68  EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127

Query: 421 VNEIAASKCRRPHMKAMHDSKLSFPL 498
              + A  C+R   K  H+SK+ FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153

>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
          Length = 174

 Score =  169 bits (428), Expect = 5e-42
 Identities = 85/170 (50%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
 Frame = +1

Query: 58  KEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEI 237
           KE++V GRRLPT+  P P  ++MRIFA + V AKSRYWYF+++L K+KK +GEIV   +I
Sbjct: 7   KEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQI 66

Query: 238 HDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVI 417
           ++  PT VKNFG+W++Y SRSG HNMYKE RD++  +AV  LYQ+MAARHRAR  SIH++
Sbjct: 67  NEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHIL 126

Query: 418 DVNEI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 564
            V EI   +  +R ++K      L FPL   + K+     F+  RP+T +
Sbjct: 127 KVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,809,312
Number of Sequences: 369166
Number of extensions: 1263962
Number of successful extensions: 3117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3116
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00823

  1. Dr_sW_021_A21
  2. Dr_sW_005_E13
  3. Dr_sW_006_L04
  4. Dr_sW_009_B14
  5. Dr_sW_013_I10
  6. Dr_sW_024_P16
  7. Dr_sW_005_C08
  8. Dr_sW_010_A16
  9. Dr_sW_020_D19
  10. Dr_sW_022_A13
  11. Dr_sW_008_C22
  12. Dr_sW_017_F06
  13. Dr_sW_010_O22
  14. Dr_sW_027_C14
  15. Dr_sW_023_C23
  16. Dr_sW_002_H08
  17. Dr_sW_003_E15