Planarian EST Database


Dr_sW_023_C23

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_023_C23
         (529 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02543|RL18A_HUMAN  60S ribosomal protein L18a                 218   5e-57
sp|O57561|RL18A_SALSA  60S ribosomal protein L18a                 218   7e-57
sp|P62718|RL18A_RAT  60S ribosomal protein L18a >gi|50403588...   217   2e-56
sp|Q7ZWJ4|RL18A_BRARE  60S ribosomal protein L18a                 213   3e-55
sp|Q90YU9|RL18A_ICTPU  60S ribosomal protein L18a                 212   5e-55
sp|P41093|RL18A_DROME  60S ribosomal protein L18a                 202   3e-52
sp|Q8WQI7|RL18A_SPOFR  60S ribosomal protein L18a                 202   4e-52
sp|O44480|RL18A_CAEEL  60S ribosomal protein L18a                 176   3e-44
sp|P51418|RL18A_ARATH  60S ribosomal protein L18a-1               172   6e-43
sp|P47913|RL20_YEAST  60S ribosomal protein L20 (L18A)            164   1e-40
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
          Length = 176

 Score =  218 bits (556), Expect = 5e-57
 Identities = 103/166 (62%), Positives = 123/166 (74%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           KV GR LPT K   P  Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++ +K
Sbjct: 11  KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  SI ++ V 
Sbjct: 71  SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
           EIAASKCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
          Length = 176

 Score =  218 bits (555), Expect = 7e-57
 Identities = 100/166 (60%), Positives = 124/166 (74%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C  +H+K
Sbjct: 11  KVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEK 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  VKNFG+W++  SRSG HNMY+EYRDLT  +AVTQ Y++M ARHRAR  SIH++ V 
Sbjct: 71  TPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQ 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
           EIAA+KCRRP +K  HDSK+ FPL   + +  H PRF T RP T F
Sbjct: 131 EIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
 sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
          Length = 176

 Score =  217 bits (552), Expect = 2e-56
 Identities = 102/166 (61%), Positives = 122/166 (73%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           KV GR LPT K   P  Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++ +K
Sbjct: 11  KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  SI ++ V 
Sbjct: 71  SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
           EIAA KCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 131 EIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
          Length = 176

 Score =  213 bits (541), Expect = 3e-55
 Identities = 99/166 (59%), Positives = 123/166 (74%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GEIV C  + +K
Sbjct: 11  KVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEK 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  +I ++ V 
Sbjct: 71  SPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQ 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
            IAA+KCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 131 VIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
          Length = 176

 Score =  212 bits (539), Expect = 5e-55
 Identities = 98/166 (59%), Positives = 122/166 (73%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C  +H++
Sbjct: 11  KVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQ 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  +I ++ V 
Sbjct: 71  SPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQ 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
            IAA+KCRR  +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 131 VIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
          Length = 177

 Score =  202 bits (515), Expect = 3e-52
 Identities = 92/166 (55%), Positives = 123/166 (74%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           +V GR+LP++K+P    Y+MRIFAPDN+ AKSR+WYF+RQLKK KK  GEIV  K++++ 
Sbjct: 11  EVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYET 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR  SI +I V+
Sbjct: 71  SPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVD 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
            I A+K RR H+K  HDSK+ FPL + ++   ++  F+  +P T F
Sbjct: 131 SIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
          Length = 177

 Score =  202 bits (514), Expect = 4e-52
 Identities = 92/166 (55%), Positives = 121/166 (72%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           +V GR+LP++ +P P  Y+MRIF+PD + AKSR+WYF+RQLKK KK  GEIV  +EI +K
Sbjct: 11  EVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEK 70

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            P  +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR  SI +I V 
Sbjct: 71  SPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 130

Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
            I AS CRRP +K  H+S + FPL + ++ +     FA  RP+T F
Sbjct: 131 VIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
          Length = 180

 Score =  176 bits (446), Expect = 3e-44
 Identities = 78/165 (47%), Positives = 114/165 (69%)
 Frame = +2

Query: 5   VTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKK 184
           V GR++PT+K+P    ++M+IFA ++V AKSR+WYF+  L+++KK NGEI+  K++ +K 
Sbjct: 15  VVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKN 74

Query: 185 PTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNE 364
           P TVKN+G+W+KY SR+G HNMY+EYRD T   AVTQ Y++M ARHRA+   IH++ V  
Sbjct: 75  PGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQT 134

Query: 365 IAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
           + A   +R  +K  HD+K+ FPL   + K  +   F T+R  T F
Sbjct: 135 VKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
          Length = 178

 Score =  172 bits (435), Expect = 6e-43
 Identities = 76/144 (52%), Positives = 104/144 (72%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           +V GR LPT+KD  P  Y+M+++A + V AKS++WYF+R+LKK+KK NG+++   EI++K
Sbjct: 10  QVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEK 69

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            PTT+KNFGIW++Y SR+G HNMYKEYRD T   AV Q+Y EMA+RHR R   I +I   
Sbjct: 70  NPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTA 129

Query: 362 EIAASKCRRPHMKAMHDSKLSFPL 433
            + A  C+R   K  H+SK+ FPL
Sbjct: 130 TVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
          Length = 174

 Score =  164 bits (415), Expect = 1e-40
 Identities = 83/167 (49%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
 Frame = +2

Query: 2   KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
           +V GRRLPT+  P P  ++MRIFA + V AKSRYWYF+++L K+KK +GEIV   +I++ 
Sbjct: 10  QVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEA 69

Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
            PT VKNFG+W++Y SRSG HNMYKE RD++  +AV  LYQ+MAARHRAR  SIH++ V 
Sbjct: 70  HPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVA 129

Query: 362 EI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
           EI   +  +R ++K      L FPL   + K+     F+  RP+T +
Sbjct: 130 EIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,374,180
Number of Sequences: 369166
Number of extensions: 1109665
Number of successful extensions: 2885
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)