Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C23
(529 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 218 5e-57
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 218 7e-57
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 217 2e-56
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 213 3e-55
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 212 5e-55
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 202 3e-52
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 202 4e-52
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 176 3e-44
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 172 6e-43
sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A) 164 1e-40
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 218 bits (556), Expect = 5e-57
Identities = 103/166 (62%), Positives = 123/166 (74%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++ +K
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI ++ V
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 131 EIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 218 bits (555), Expect = 7e-57
Identities = 100/166 (60%), Positives = 124/166 (74%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C +H+K
Sbjct: 11 KVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEK 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR SIH++ V
Sbjct: 71 TPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQ 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 131 EIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 217 bits (552), Expect = 2e-56
Identities = 102/166 (61%), Positives = 122/166 (73%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++ +K
Sbjct: 11 KVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI ++ V
Sbjct: 71 SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 131 EIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 213 bits (541), Expect = 3e-55
Identities = 99/166 (59%), Positives = 123/166 (74%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GEIV C + +K
Sbjct: 11 KVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEK 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I ++ V
Sbjct: 71 SPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQ 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 131 VIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 212 bits (539), Expect = 5e-55
Identities = 98/166 (59%), Positives = 122/166 (73%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C +H++
Sbjct: 11 KVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQ 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I ++ V
Sbjct: 71 SPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQ 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 131 VIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 202 bits (515), Expect = 3e-52
Identities = 92/166 (55%), Positives = 123/166 (74%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
+V GR+LP++K+P Y+MRIFAPDN+ AKSR+WYF+RQLKK KK GEIV K++++
Sbjct: 11 EVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYET 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR SI +I V+
Sbjct: 71 SPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVD 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 131 SIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 202 bits (514), Expect = 4e-52
Identities = 92/166 (55%), Positives = 121/166 (72%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
+V GR+LP++ +P P Y+MRIF+PD + AKSR+WYF+RQLKK KK GEIV +EI +K
Sbjct: 11 EVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEK 70
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR SI +I V
Sbjct: 71 SPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVE 130
Query: 362 EIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 131 VIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 176 bits (446), Expect = 3e-44
Identities = 78/165 (47%), Positives = 114/165 (69%)
Frame = +2
Query: 5 VTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKK 184
V GR++PT+K+P ++M+IFA ++V AKSR+WYF+ L+++KK NGEI+ K++ +K
Sbjct: 15 VVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKN 74
Query: 185 PTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNE 364
P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+ IH++ V
Sbjct: 75 PGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQT 134
Query: 365 IAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
+ A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 135 VKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 172 bits (435), Expect = 6e-43
Identities = 76/144 (52%), Positives = 104/144 (72%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
+V GR LPT+KD P Y+M+++A + V AKS++WYF+R+LKK+KK NG+++ EI++K
Sbjct: 10 QVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEK 69
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I +I
Sbjct: 70 NPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTA 129
Query: 362 EIAASKCRRPHMKAMHDSKLSFPL 433
+ A C+R K H+SK+ FPL
Sbjct: 130 TVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
Length = 174
Score = 164 bits (415), Expect = 1e-40
Identities = 83/167 (49%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 KVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDK 181
+V GRRLPT+ P P ++MRIFA + V AKSRYWYF+++L K+KK +GEIV +I++
Sbjct: 10 QVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEA 69
Query: 182 KPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVN 361
PT VKNFG+W++Y SRSG HNMYKE RD++ +AV LYQ+MAARHRAR SIH++ V
Sbjct: 70 HPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVA 129
Query: 362 EI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 499
EI + +R ++K L FPL + K+ F+ RP+T +
Sbjct: 130 EIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,374,180
Number of Sequences: 369166
Number of extensions: 1109665
Number of successful extensions: 2885
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)