Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_L04
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 224 1e-58
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 223 2e-58
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 222 4e-58
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 218 7e-57
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 217 1e-56
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 209 3e-54
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 209 5e-54
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 180 2e-45
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 174 2e-43
sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A) 169 4e-42
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 224 bits (570), Expect = 1e-58
Identities = 105/170 (61%), Positives = 127/170 (74%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
L+E+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C +
Sbjct: 7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQ 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI +
Sbjct: 67 VFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
+ V EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 127 MKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 223 bits (569), Expect = 2e-58
Identities = 102/170 (60%), Positives = 128/170 (75%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
L+E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C
Sbjct: 7 LREYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGL 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+H+K P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR SIH+
Sbjct: 67 VHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
+ V EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 127 MKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 222 bits (566), Expect = 4e-58
Identities = 104/170 (61%), Positives = 126/170 (74%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
L+E+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C +
Sbjct: 7 LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQ 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI +
Sbjct: 67 VFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
+ V EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 127 MKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 218 bits (555), Expect = 7e-57
Identities = 101/170 (59%), Positives = 127/170 (74%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
L+E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GEIV C
Sbjct: 7 LREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGL 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I +
Sbjct: 67 VFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
+ V IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 127 MKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 217 bits (553), Expect = 1e-56
Identities = 100/170 (58%), Positives = 126/170 (74%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
L+E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C
Sbjct: 7 LREYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGL 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+H++ P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I +
Sbjct: 67 VHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
+ V IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 127 MKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 209 bits (532), Expect = 3e-54
Identities = 95/170 (55%), Positives = 127/170 (74%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
LKE++V GR+LP++K+P Y+MRIFAPDN+ AKSR+WYF+RQLKK KK GEIV K+
Sbjct: 7 LKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQ 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+++ P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR SI +
Sbjct: 67 VYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
I V+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 127 IKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 209 bits (531), Expect = 5e-54
Identities = 95/170 (55%), Positives = 125/170 (73%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
LKE++V GR+LP++ +P P Y+MRIF+PD + AKSR+WYF+RQLKK KK GEIV +E
Sbjct: 7 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIRE 66
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
I +K P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR SI +
Sbjct: 67 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 126
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
I V I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 127 IKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 180 bits (456), Expect = 2e-45
Identities = 80/170 (47%), Positives = 117/170 (68%)
Frame = +2
Query: 5 LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
L E+ V GR++PT+K+P ++M+IFA ++V AKSR+WYF+ L+++KK NGEI+ K+
Sbjct: 10 LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69
Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
+ +K P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+ IH+
Sbjct: 70 VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHI 129
Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
+ V + A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 130 LKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 174 bits (440), Expect = 2e-43
Identities = 76/146 (52%), Positives = 106/146 (72%)
Frame = +2
Query: 11 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 190
+++V GR LPT+KD P Y+M+++A + V AKS++WYF+R+LKK+KK NG+++ EI+
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 191 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 370
+K PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I +I
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 371 VNEIAASKCRRPHMKAMHDSKLSFPL 448
+ A C+R K H+SK+ FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
Length = 174
Score = 169 bits (428), Expect = 4e-42
Identities = 85/170 (50%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
Frame = +2
Query: 8 KEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEI 187
KE++V GRRLPT+ P P ++MRIFA + V AKSRYWYF+++L K+KK +GEIV +I
Sbjct: 7 KEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQI 66
Query: 188 HDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVI 367
++ PT VKNFG+W++Y SRSG HNMYKE RD++ +AV LYQ+MAARHRAR SIH++
Sbjct: 67 NEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHIL 126
Query: 368 DVNEI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
V EI + +R ++K L FPL + K+ F+ RP+T +
Sbjct: 127 KVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,189,988
Number of Sequences: 369166
Number of extensions: 1133136
Number of successful extensions: 2934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2933
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)