Planarian EST Database


Dr_sW_006_L04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_006_L04
         (542 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02543|RL18A_HUMAN  60S ribosomal protein L18a                 224   1e-58
sp|O57561|RL18A_SALSA  60S ribosomal protein L18a                 223   2e-58
sp|P62718|RL18A_RAT  60S ribosomal protein L18a >gi|50403588...   222   4e-58
sp|Q7ZWJ4|RL18A_BRARE  60S ribosomal protein L18a                 218   7e-57
sp|Q90YU9|RL18A_ICTPU  60S ribosomal protein L18a                 217   1e-56
sp|P41093|RL18A_DROME  60S ribosomal protein L18a                 209   3e-54
sp|Q8WQI7|RL18A_SPOFR  60S ribosomal protein L18a                 209   5e-54
sp|O44480|RL18A_CAEEL  60S ribosomal protein L18a                 180   2e-45
sp|P51418|RL18A_ARATH  60S ribosomal protein L18a-1               174   2e-43
sp|P47913|RL20_YEAST  60S ribosomal protein L20 (L18A)            169   4e-42
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
          Length = 176

 Score =  224 bits (570), Expect = 1e-58
 Identities = 105/170 (61%), Positives = 127/170 (74%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           L+E+KV GR LPT K   P  Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C +
Sbjct: 7   LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQ 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           + +K P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  SI +
Sbjct: 67  VFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           + V EIAASKCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 127 MKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
          Length = 176

 Score =  223 bits (569), Expect = 2e-58
 Identities = 102/170 (60%), Positives = 128/170 (75%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           L+E+KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C  
Sbjct: 7   LREYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGL 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           +H+K P  VKNFG+W++  SRSG HNMY+EYRDLT  +AVTQ Y++M ARHRAR  SIH+
Sbjct: 67  VHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           + V EIAA+KCRRP +K  HDSK+ FPL   + +  H PRF T RP T F
Sbjct: 127 MKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
 sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
          Length = 176

 Score =  222 bits (566), Expect = 4e-58
 Identities = 104/170 (61%), Positives = 126/170 (74%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           L+E+KV GR LPT K   P  Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C +
Sbjct: 7   LREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQ 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           + +K P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  SI +
Sbjct: 67  VFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           + V EIAA KCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 127 MKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
          Length = 176

 Score =  218 bits (555), Expect = 7e-57
 Identities = 101/170 (59%), Positives = 127/170 (74%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           L+E+KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GEIV C  
Sbjct: 7   LREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGL 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           + +K P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  +I +
Sbjct: 67  VFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           + V  IAA+KCRRP +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 127 MKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
          Length = 176

 Score =  217 bits (553), Expect = 1e-56
 Identities = 100/170 (58%), Positives = 126/170 (74%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           L+E+KV GR LP+ K+P P  Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C  
Sbjct: 7   LREYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGL 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           +H++ P  VKNFGIW++Y SRSG HNMY+EYRDLT   AVTQ Y++M ARHRAR  +I +
Sbjct: 67  VHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           + V  IAA+KCRR  +K  HDSK+ FPL   + +  HKPRF T RP T F
Sbjct: 127 MKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
          Length = 177

 Score =  209 bits (532), Expect = 3e-54
 Identities = 95/170 (55%), Positives = 127/170 (74%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           LKE++V GR+LP++K+P    Y+MRIFAPDN+ AKSR+WYF+RQLKK KK  GEIV  K+
Sbjct: 7   LKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQ 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           +++  P  +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR  SI +
Sbjct: 67  VYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           I V+ I A+K RR H+K  HDSK+ FPL + ++   ++  F+  +P T F
Sbjct: 127 IKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
          Length = 177

 Score =  209 bits (531), Expect = 5e-54
 Identities = 95/170 (55%), Positives = 125/170 (73%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           LKE++V GR+LP++ +P P  Y+MRIF+PD + AKSR+WYF+RQLKK KK  GEIV  +E
Sbjct: 7   LKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIRE 66

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           I +K P  +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR  SI +
Sbjct: 67  IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 126

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           I V  I AS CRRP +K  H+S + FPL + ++ +     FA  RP+T F
Sbjct: 127 IKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
          Length = 180

 Score =  180 bits (456), Expect = 2e-45
 Identities = 80/170 (47%), Positives = 117/170 (68%)
 Frame = +2

Query: 5   LKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKE 184
           L E+ V GR++PT+K+P    ++M+IFA ++V AKSR+WYF+  L+++KK NGEI+  K+
Sbjct: 10  LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69

Query: 185 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 364
           + +K P TVKN+G+W+KY SR+G HNMY+EYRD T   AVTQ Y++M ARHRA+   IH+
Sbjct: 70  VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHI 129

Query: 365 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
           + V  + A   +R  +K  HD+K+ FPL   + K  +   F T+R  T F
Sbjct: 130 LKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
          Length = 178

 Score =  174 bits (440), Expect = 2e-43
 Identities = 76/146 (52%), Positives = 106/146 (72%)
 Frame = +2

Query: 11  EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 190
           +++V GR LPT+KD  P  Y+M+++A + V AKS++WYF+R+LKK+KK NG+++   EI+
Sbjct: 8   QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67

Query: 191 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 370
           +K PTT+KNFGIW++Y SR+G HNMYKEYRD T   AV Q+Y EMA+RHR R   I +I 
Sbjct: 68  EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127

Query: 371 VNEIAASKCRRPHMKAMHDSKLSFPL 448
              + A  C+R   K  H+SK+ FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
          Length = 174

 Score =  169 bits (428), Expect = 4e-42
 Identities = 85/170 (50%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
 Frame = +2

Query: 8   KEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEI 187
           KE++V GRRLPT+  P P  ++MRIFA + V AKSRYWYF+++L K+KK +GEIV   +I
Sbjct: 7   KEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQI 66

Query: 188 HDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVI 367
           ++  PT VKNFG+W++Y SRSG HNMYKE RD++  +AV  LYQ+MAARHRAR  SIH++
Sbjct: 67  NEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHIL 126

Query: 368 DVNEI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 514
            V EI   +  +R ++K      L FPL   + K+     F+  RP+T +
Sbjct: 127 KVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,189,988
Number of Sequences: 369166
Number of extensions: 1133136
Number of successful extensions: 2934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2933
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)