Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H08
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 152 3e-37
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 150 9e-37
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 148 4e-36
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 145 4e-35
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 141 4e-34
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 134 8e-32
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 131 4e-31
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 119 3e-27
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 110 8e-25
sp|Q9LUD4|RL18B_ARATH 60S ribosomal protein L18a-2 106 2e-23
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 152 bits (383), Expect = 3e-37
Identities = 70/116 (60%), Positives = 84/116 (72%)
Frame = +2
Query: 2 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 181
IV C ++ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 182 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
SI ++ V EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 150 bits (379), Expect = 9e-37
Identities = 69/116 (59%), Positives = 83/116 (71%)
Frame = +2
Query: 2 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 181
IV C ++ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 182 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
SI ++ V EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 148 bits (373), Expect = 4e-36
Identities = 67/115 (58%), Positives = 83/115 (72%)
Frame = +2
Query: 5 VECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARG 184
V C +H+K P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR
Sbjct: 62 VYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARA 121
Query: 185 SSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
SIH++ V EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 122 HSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 145 bits (365), Expect = 4e-35
Identities = 67/116 (57%), Positives = 82/116 (70%)
Frame = +2
Query: 2 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 181
IV C + +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 IVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120
Query: 182 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
+I ++ V IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 141 bits (356), Expect = 4e-34
Identities = 65/115 (56%), Positives = 81/115 (70%)
Frame = +2
Query: 5 VECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARG 184
V C +H++ P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 62 VYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARA 121
Query: 185 SSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
+I ++ V IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 122 HAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 134 bits (336), Expect = 8e-32
Identities = 62/116 (53%), Positives = 81/116 (69%)
Frame = +2
Query: 2 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 181
IV +EI +K P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR
Sbjct: 61 IVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 120
Query: 182 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
SI +I V I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 121 AHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 131 bits (330), Expect = 4e-31
Identities = 60/116 (51%), Positives = 82/116 (70%)
Frame = +2
Query: 2 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 181
IV K++++ P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR
Sbjct: 61 IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120
Query: 182 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
SI +I V+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 119 bits (297), Expect = 3e-27
Identities = 53/116 (45%), Positives = 75/116 (64%)
Frame = +2
Query: 2 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 181
I+ K++ +K P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+
Sbjct: 64 ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123
Query: 182 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 349
IH++ V + A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 110 bits (276), Expect = 8e-25
Identities = 49/89 (55%), Positives = 62/89 (69%)
Frame = +2
Query: 17 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 196
EI++K PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I
Sbjct: 65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 197 VIDVNEIAASKCRRPHMKAMHDSKLSFPL 283
+I + A C+R K H+SK+ FPL
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|Q9LUD4|RL18B_ARATH 60S ribosomal protein L18a-2
Length = 178
Score = 106 bits (264), Expect = 2e-23
Identities = 47/89 (52%), Positives = 60/89 (67%)
Frame = +2
Query: 17 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 196
EI +K PTT+KN+GIW++Y SR+G HNMYKEYRD T V Q+Y EMA+RHR R I
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124
Query: 197 VIDVNEIAASKCRRPHMKAMHDSKLSFPL 283
+I + A C+R K H+SK+ FPL
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPL 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,188,931
Number of Sequences: 369166
Number of extensions: 762684
Number of successful extensions: 2197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2197
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)