Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_F06
(547 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 221 7e-58
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 221 9e-58
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 220 2e-57
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 216 4e-56
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 215 6e-56
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 206 4e-53
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 205 5e-53
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 178 7e-45
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 174 2e-43
sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A) 167 2e-41
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 221 bits (564), Expect = 7e-58
Identities = 104/168 (61%), Positives = 125/168 (74%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI ++
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 221 bits (563), Expect = 9e-58
Identities = 101/168 (60%), Positives = 126/168 (75%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C +H
Sbjct: 9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR SIH++
Sbjct: 69 EKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 129 VQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 220 bits (560), Expect = 2e-57
Identities = 103/168 (61%), Positives = 124/168 (73%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI ++
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 216 bits (549), Expect = 4e-56
Identities = 100/168 (59%), Positives = 125/168 (74%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GEIV C +
Sbjct: 9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVF 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I ++
Sbjct: 69 EKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 129 VQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 215 bits (547), Expect = 6e-56
Identities = 99/168 (58%), Positives = 124/168 (73%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C +H
Sbjct: 9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
++ P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I ++
Sbjct: 69 EQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 129 VQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 206 bits (523), Expect = 4e-53
Identities = 93/168 (55%), Positives = 125/168 (74%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E++V GR+LP++K+P Y+MRIFAPDN+ AKSR+WYF+RQLKK KK GEIV K+++
Sbjct: 9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVY 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+ P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR SI +I
Sbjct: 69 ETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 129 VDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 205 bits (522), Expect = 5e-53
Identities = 93/168 (55%), Positives = 123/168 (73%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E++V GR+LP++ +P P Y+MRIF+PD + AKSR+WYF+RQLKK KK GEIV +EI
Sbjct: 9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIP 68
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR SI +I
Sbjct: 69 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 129 VEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 178 bits (452), Expect = 7e-45
Identities = 79/168 (47%), Positives = 116/168 (69%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E+ V GR++PT+K+P ++M+IFA ++V AKSR+WYF+ L+++KK NGEI+ K++
Sbjct: 12 EYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVF 71
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+ IH++
Sbjct: 72 EKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILK 131
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V + A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 132 VQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 174 bits (440), Expect = 2e-43
Identities = 76/146 (52%), Positives = 106/146 (72%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
+++V GR LPT+KD P Y+M+++A + V AKS++WYF+R+LKK+KK NG+++ EI+
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+K PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I +I
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 376 VNEIAASKCRRPHMKAMHDSKLSFPL 453
+ A C+R K H+SK+ FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
Length = 174
Score = 167 bits (423), Expect = 2e-41
Identities = 84/169 (49%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Frame = +1
Query: 16 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 195
E++V GRRLPT+ P P ++MRIFA + V AKSRYWYF+++L K+KK +GEIV +I+
Sbjct: 8 EYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQIN 67
Query: 196 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 375
+ PT VKNFG+W++Y SRSG HNMYKE RD++ +AV LYQ+MAARHRAR SIH++
Sbjct: 68 EAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILK 127
Query: 376 VNEI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 519
V EI + +R ++K L FPL + K+ F+ RP+T +
Sbjct: 128 VAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,326,318
Number of Sequences: 369166
Number of extensions: 1160200
Number of successful extensions: 3004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)