Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_D19
(362 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 147 1e-35
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 145 2e-35
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 145 3e-35
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 141 5e-34
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 139 2e-33
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 130 9e-31
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 127 1e-29
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 115 3e-26
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 110 8e-25
sp|Q9LUD4|RL18B_ARATH 60S ribosomal protein L18a-2 106 2e-23
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 147 bits (370), Expect = 1e-35
Identities = 67/111 (60%), Positives = 81/111 (72%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
++ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI
Sbjct: 66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
++ V EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 145 bits (367), Expect = 2e-35
Identities = 65/110 (59%), Positives = 81/110 (73%)
Frame = +2
Query: 5 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 184
+H+K P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR SIH+
Sbjct: 67 VHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHI 126
Query: 185 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
+ V EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 127 MKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 145 bits (366), Expect = 3e-35
Identities = 66/111 (59%), Positives = 80/111 (72%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
++ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI
Sbjct: 66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
++ V EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 126 IMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 141 bits (355), Expect = 5e-34
Identities = 64/110 (58%), Positives = 79/110 (71%)
Frame = +2
Query: 5 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 184
+ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I +
Sbjct: 67 VFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126
Query: 185 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
+ V IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 127 MKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 139 bits (350), Expect = 2e-33
Identities = 63/110 (57%), Positives = 79/110 (71%)
Frame = +2
Query: 5 IHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHV 184
+H++ P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I +
Sbjct: 67 VHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126
Query: 185 IDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
+ V IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 127 MKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 130 bits (327), Expect = 9e-31
Identities = 60/111 (54%), Positives = 78/111 (70%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
EI +K P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR SI
Sbjct: 66 EIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 125
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
+I V I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 126 IIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 127 bits (318), Expect = 1e-29
Identities = 57/111 (51%), Positives = 79/111 (71%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
++++ P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR SI
Sbjct: 66 QVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQ 125
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
+I V+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 126 IIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 115 bits (288), Expect = 3e-26
Identities = 51/111 (45%), Positives = 72/111 (64%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
++ +K P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+ IH
Sbjct: 69 QVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIH 128
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 334
++ V + A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 129 ILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 110 bits (276), Expect = 8e-25
Identities = 49/89 (55%), Positives = 62/89 (69%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
EI++K PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I
Sbjct: 65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPL 268
+I + A C+R K H+SK+ FPL
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|Q9LUD4|RL18B_ARATH 60S ribosomal protein L18a-2
Length = 178
Score = 106 bits (264), Expect = 2e-23
Identities = 47/89 (52%), Positives = 60/89 (67%)
Frame = +2
Query: 2 EIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIH 181
EI +K PTT+KN+GIW++Y SR+G HNMYKEYRD T V Q+Y EMA+RHR R I
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124
Query: 182 VIDVNEIAASKCRRPHMKAMHDSKLSFPL 268
+I + A C+R K H+SK+ FPL
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPL 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,299,708
Number of Sequences: 369166
Number of extensions: 715642
Number of successful extensions: 2062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)