Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E15
(456 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 192 2e-49
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 191 7e-49
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 189 2e-48
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 184 6e-47
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 182 2e-46
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 174 6e-44
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 174 6e-44
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 152 3e-37
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 146 2e-35
sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a 142 5e-34
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 192 bits (489), Expect = 2e-49
Identities = 88/142 (61%), Positives = 107/142 (75%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
P++V AKSR+WYF+ QLKKMKK +GEIV C ++ +K P VKNFGIW++Y SRSG HNMY
Sbjct: 35 PNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDLT AVTQ Y++M ARHRAR SI ++ V EIAASKCRRP +K HDSK+ FPL
Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ + HKPRF T RP T F
Sbjct: 155 PHRVLRRQHKPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 191 bits (485), Expect = 7e-49
Identities = 87/142 (61%), Positives = 106/142 (74%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
P++V AKSR+WYF+ QLKKMKK +GEIV C ++ +K P VKNFGIW++Y SRSG HNMY
Sbjct: 35 PNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDLT AVTQ Y++M ARHRAR SI ++ V EIAA KCRRP +K HDSK+ FPL
Sbjct: 95 REYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ + HKPRF T RP T F
Sbjct: 155 PHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 189 bits (480), Expect = 2e-48
Identities = 85/142 (59%), Positives = 106/142 (74%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
P++V AKSR+WYF+ QL+KMKK NGE V C +H+K P VKNFG+W++ SRSG HNMY
Sbjct: 35 PNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDLT +AVTQ Y++M ARHRAR SIH++ V EIAA+KCRRP +K HDSK+ FPL
Sbjct: 95 REYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ + H PRF T RP T F
Sbjct: 155 PHRVLRRQHNPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 184 bits (468), Expect = 6e-47
Identities = 84/142 (59%), Positives = 105/142 (73%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
P++V AKSR+WYF+ QL+KMKK +GEIV C + +K P VKNFGIW++Y SRSG HNMY
Sbjct: 35 PNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDLT AVTQ Y++M ARHRAR +I ++ V IAA+KCRRP +K HDSK+ FPL
Sbjct: 95 REYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ + HKPRF T RP T F
Sbjct: 155 PHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 182 bits (463), Expect = 2e-46
Identities = 83/142 (58%), Positives = 104/142 (73%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
P++V AKSR+WYF+ QL+KMKK NGE V C +H++ P VKNFGIW++Y SRSG HNMY
Sbjct: 35 PNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDLT AVTQ Y++M ARHRAR +I ++ V IAA+KCRR +K HDSK+ FPL
Sbjct: 95 REYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ + HKPRF T RP T F
Sbjct: 155 PHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 174 bits (442), Expect = 6e-44
Identities = 79/142 (55%), Positives = 104/142 (73%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
PDN+ AKSR+WYF+RQLKK KK GEIV K++++ P +KNFGIW++Y SRSG HNMY
Sbjct: 35 PDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDLT G AVTQ Y++M ARHRAR SI +I V+ I A+K RR H+K HDSK+ FPL
Sbjct: 95 REYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ ++ ++ F+ +P T F
Sbjct: 155 VQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 174 bits (442), Expect = 6e-44
Identities = 80/142 (56%), Positives = 102/142 (71%)
Frame = +3
Query: 3 PDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMY 182
PD + AKSR+WYF+RQLKK KK GEIV +EI +K P +KNFGIW++Y SRSG+HNMY
Sbjct: 35 PDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMY 94
Query: 183 KEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
+EYRDL+ G AVTQ Y++M ARHRAR SI +I V I AS CRRP +K H+S + FPL
Sbjct: 95 REYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL 154
Query: 363 KRSLNKNLHKPRFATSRPTTSF 428
+ ++ + FA RP+T F
Sbjct: 155 PKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 152 bits (385), Expect = 3e-37
Identities = 67/141 (47%), Positives = 96/141 (68%)
Frame = +3
Query: 6 DNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYK 185
++V AKSR+WYF+ L+++KK NGEI+ K++ +K P TVKN+G+W+KY SR+G HNMY+
Sbjct: 39 NHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYR 98
Query: 186 EYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLK 365
EYRD T AVTQ Y++M ARHRA+ IH++ V + A +R +K HD+K+ FPL
Sbjct: 99 EYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLP 158
Query: 366 RSLNKNLHKPRFATSRPTTSF 428
+ K + F T+R T F
Sbjct: 159 HRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 146 bits (369), Expect = 2e-35
Identities = 64/119 (53%), Positives = 86/119 (72%)
Frame = +3
Query: 6 DNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYK 185
+ V AKS++WYF+R+LKK+KK NG+++ EI++K PTT+KNFGIW++Y SR+G HNMYK
Sbjct: 35 NEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYK 94
Query: 186 EYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 362
EYRD T AV Q+Y EMA+RHR R I +I + A C+R K H+SK+ FPL
Sbjct: 95 EYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a
Length = 178
Score = 142 bits (357), Expect = 5e-34
Identities = 69/141 (48%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Frame = +3
Query: 6 DNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYK 185
+ V AKS++WYF+R+LKK+KK NG+++ EI +K PT +KN+GIW++Y SR+G HNMYK
Sbjct: 35 NEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYK 94
Query: 186 EYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLK 365
EYRD T AV Q+Y EMA+RHR R I +I I A C+R K H+SK+ FPL
Sbjct: 95 EYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLV 154
Query: 366 ----RSLNKNLHKPRFATSRP 416
R ++ L K + SRP
Sbjct: 155 TRKIRPPSRKL-KTHYKASRP 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,452,162
Number of Sequences: 369166
Number of extensions: 889463
Number of successful extensions: 2389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2389
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)