Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C08
(579 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 234 2e-61
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 233 2e-61
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 232 4e-61
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 228 8e-60
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 227 1e-59
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 216 4e-56
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 215 7e-56
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 182 4e-46
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 174 2e-43
sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A) 169 5e-42
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 234 bits (596), Expect = 2e-61
Identities = 110/176 (62%), Positives = 133/176 (75%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
MKA+GTL+E+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
IV C ++ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
SI ++ V EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 233 bits (595), Expect = 2e-61
Identities = 107/176 (60%), Positives = 134/176 (76%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
MKA+GTL+E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE
Sbjct: 1 MKASGTLREYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
V C +H+K P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR
Sbjct: 61 TVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
SIH++ V EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 121 AHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 232 bits (592), Expect = 4e-61
Identities = 109/176 (61%), Positives = 132/176 (75%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
MKA+GTL+E+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
IV C ++ +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
SI ++ V EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 228 bits (581), Expect = 8e-60
Identities = 106/176 (60%), Positives = 133/176 (75%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
MKA+GTL+E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GE
Sbjct: 1 MKASGTLREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
IV C + +K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 IVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
+I ++ V IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 227 bits (579), Expect = 1e-59
Identities = 105/176 (59%), Positives = 132/176 (75%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
MKA+GTL+E+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE
Sbjct: 1 MKASGTLREYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
V C +H++ P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR
Sbjct: 61 TVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
+I ++ V IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 121 AHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 216 bits (549), Expect = 4e-56
Identities = 99/176 (56%), Positives = 129/176 (73%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
MKA G LKE++V GR+LP++ +P P Y+MRIF+PD + AKSR+WYF+RQLKK KK GE
Sbjct: 1 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
IV +EI +K P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR
Sbjct: 61 IVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
SI +I V I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 121 AHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 215 bits (547), Expect = 7e-56
Identities = 98/176 (55%), Positives = 131/176 (74%)
Frame = +3
Query: 24 MKATGTLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
M+A G LKE++V GR+LP++K+P Y+MRIFAPDN+ AKSR+WYF+RQLKK KK GE
Sbjct: 1 MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
IV K++++ P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR
Sbjct: 61 IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
SI +I V+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 182 bits (463), Expect = 4e-46
Identities = 84/176 (47%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Frame = +3
Query: 27 KATG-TLKEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGE 203
KA G TL E+ V GR++PT+K+P ++M+IFA ++V AKSR+WYF+ L+++KK NGE
Sbjct: 4 KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63
Query: 204 IVECKEIHDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRAR 383
I+ K++ +K P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+
Sbjct: 64 ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123
Query: 384 GSSIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
IH++ V + A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 174 bits (440), Expect = 2e-43
Identities = 76/146 (52%), Positives = 106/146 (72%)
Frame = +3
Query: 48 EFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIH 227
+++V GR LPT+KD P Y+M+++A + V AKS++WYF+R+LKK+KK NG+++ EI+
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 228 DKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVID 407
+K PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I +I
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 408 VNEIAASKCRRPHMKAMHDSKLSFPL 485
+ A C+R K H+SK+ FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
Length = 174
Score = 169 bits (428), Expect = 5e-42
Identities = 85/170 (50%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
Frame = +3
Query: 45 KEFKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEI 224
KE++V GRRLPT+ P P ++MRIFA + V AKSRYWYF+++L K+KK +GEIV +I
Sbjct: 7 KEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQI 66
Query: 225 HDKKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVI 404
++ PT VKNFG+W++Y SRSG HNMYKE RD++ +AV LYQ+MAARHRAR SIH++
Sbjct: 67 NEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHIL 126
Query: 405 DVNEI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 551
V EI + +R ++K L FPL + K+ F+ RP+T +
Sbjct: 127 KVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,526,433
Number of Sequences: 369166
Number of extensions: 1256771
Number of successful extensions: 3097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3096
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)