Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A16
(191 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 68 6e-12
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 68 6e-12
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 67 2e-11
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 63 2e-10
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 59 3e-09
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 48 8e-06
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 47 1e-05
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 40 0.001
sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a 30 1.3
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 30 2.3
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 68.2 bits (165), Expect = 6e-12
Identities = 31/54 (57%), Positives = 37/54 (68%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
SI ++ V EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 123 SIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 68.2 bits (165), Expect = 6e-12
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
SIH++ V EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 123 SIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 66.6 bits (161), Expect = 2e-11
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
SI ++ V EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 123 SIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 63.2 bits (152), Expect = 2e-10
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
+I ++ V IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 123 AIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
+I ++ V IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 123 AIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 47.8 bits (112), Expect = 8e-06
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
SI +I V I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 123 SIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +2
Query: 2 SIHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
SI +I V+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 123 SIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 5 IHVIDVNEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 163
IH++ V + A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 127 IHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a
Length = 178
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 5 IHVIDVNEIAASKCRRPHMKAMHDSKLSFPLK----RSLNKNLHKPRFATSRP 151
I +I I A C+R K H+SK+ FPL R ++ L K + SRP
Sbjct: 123 IQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKL-KTHYKASRP 174
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 5 IHVIDVNEIAASKCRRPHMKAMHDSKLSFPL 97
I +I + A C+R K H+SK+ FPL
Sbjct: 123 IQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,174,634
Number of Sequences: 369166
Number of extensions: 302127
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)