Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C22
(531 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a 219 2e-57
sp|O57561|RL18A_SALSA 60S ribosomal protein L18a 219 3e-57
sp|P62718|RL18A_RAT 60S ribosomal protein L18a >gi|50403588... 218 7e-57
sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a 214 1e-55
sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a 213 2e-55
sp|P41093|RL18A_DROME 60S ribosomal protein L18a 204 1e-52
sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a 203 2e-52
sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a 176 2e-44
sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1 173 3e-43
sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A) 165 6e-41
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a
Length = 176
Score = 219 bits (559), Expect = 2e-57
Identities = 103/167 (61%), Positives = 124/167 (74%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++ +
Sbjct: 10 YKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI ++ V
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
EIAASKCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 130 EEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a
Length = 176
Score = 219 bits (558), Expect = 3e-57
Identities = 100/167 (59%), Positives = 125/167 (74%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C +H+
Sbjct: 10 YKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K P VKNFG+W++ SRSG HNMY+EYRDLT +AVTQ Y++M ARHRAR SIH++ V
Sbjct: 70 KTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
EIAA+KCRRP +K HDSK+ FPL + + H PRF T RP T F
Sbjct: 130 QEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a
sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a
Length = 176
Score = 218 bits (555), Expect = 7e-57
Identities = 102/167 (61%), Positives = 123/167 (73%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
+KV GR LPT K P Y+MRIFAP++V AKSR+WYF+ QLKKMKK +GEIV C ++ +
Sbjct: 10 YKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR SI ++ V
Sbjct: 70 KSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
EIAA KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 130 EEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q7ZWJ4|RL18A_BRARE 60S ribosomal protein L18a
Length = 176
Score = 214 bits (544), Expect = 1e-55
Identities = 99/167 (59%), Positives = 124/167 (74%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK +GEIV C + +
Sbjct: 10 YKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I ++ V
Sbjct: 70 KSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
IAA+KCRRP +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 130 QVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a
Length = 176
Score = 213 bits (542), Expect = 2e-55
Identities = 98/167 (58%), Positives = 123/167 (73%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
+KV GR LP+ K+P P Y+MRIFAP++V AKSR+WYF+ QL+KMKK NGE V C +H+
Sbjct: 10 YKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
+ P VKNFGIW++Y SRSG HNMY+EYRDLT AVTQ Y++M ARHRAR +I ++ V
Sbjct: 70 QSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
IAA+KCRR +K HDSK+ FPL + + HKPRF T RP T F
Sbjct: 130 QVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a
Length = 177
Score = 204 bits (518), Expect = 1e-52
Identities = 92/167 (55%), Positives = 124/167 (74%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
++V GR+LP++K+P Y+MRIFAPDN+ AKSR+WYF+RQLKK KK GEIV K++++
Sbjct: 10 YEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
P +KNFGIW++Y SRSG HNMY+EYRDLT G AVTQ Y++M ARHRAR SI +I V
Sbjct: 70 TSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
+ I A+K RR H+K HDSK+ FPL + ++ ++ F+ +P T F
Sbjct: 130 DSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a
Length = 177
Score = 203 bits (517), Expect = 2e-52
Identities = 92/167 (55%), Positives = 122/167 (73%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
++V GR+LP++ +P P Y+MRIF+PD + AKSR+WYF+RQLKK KK GEIV +EI +
Sbjct: 10 YEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPE 69
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K P +KNFGIW++Y SRSG+HNMY+EYRDL+ G AVTQ Y++M ARHRAR SI +I V
Sbjct: 70 KSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKV 129
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
I AS CRRP +K H+S + FPL + ++ + FA RP+T F
Sbjct: 130 EVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a
Length = 180
Score = 176 bits (447), Expect = 2e-44
Identities = 78/167 (46%), Positives = 115/167 (68%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
+ V GR++PT+K+P ++M+IFA ++V AKSR+WYF+ L+++KK NGEI+ K++ +
Sbjct: 13 YVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFE 72
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K P TVKN+G+W+KY SR+G HNMY+EYRD T AVTQ Y++M ARHRA+ IH++ V
Sbjct: 73 KNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKV 132
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
+ A +R +K HD+K+ FPL + K + F T+R T F
Sbjct: 133 QTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179
>sp|P51418|RL18A_ARATH 60S ribosomal protein L18a-1
Length = 178
Score = 173 bits (438), Expect = 3e-43
Identities = 76/145 (52%), Positives = 105/145 (72%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
++V GR LPT+KD P Y+M+++A + V AKS++WYF+R+LKK+KK NG+++ EI++
Sbjct: 9 YQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYE 68
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
K PTT+KNFGIW++Y SR+G HNMYKEYRD T AV Q+Y EMA+RHR R I +I
Sbjct: 69 KNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKT 128
Query: 363 NEIAASKCRRPHMKAMHDSKLSFPL 437
+ A C+R K H+SK+ FPL
Sbjct: 129 ATVPAKLCKRESTKQFHNSKIKFPL 153
>sp|P47913|RL20_YEAST 60S ribosomal protein L20 (L18A)
Length = 174
Score = 165 bits (418), Expect = 6e-41
Identities = 83/168 (49%), Positives = 115/168 (68%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 FKVTGRRLPTDKDPNPTPYQMRIFAPDNVTAKSRYWYFIRQLKKMKKGNGEIVECKEIHD 182
++V GRRLPT+ P P ++MRIFA + V AKSRYWYF+++L K+KK +GEIV +I++
Sbjct: 9 YQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINE 68
Query: 183 KKPTTVKNFGIWIKYYSRSGIHNMYKEYRDLTCGSAVTQLYQEMAARHRARGSSIHVIDV 362
PT VKNFG+W++Y SRSG HNMYKE RD++ +AV LYQ+MAARHRAR SIH++ V
Sbjct: 69 AHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKV 128
Query: 363 NEI-AASKCRRPHMKAMHDSKLSFPLKRSLNKNLHKPRFATSRPTTSF 503
EI + +R ++K L FPL + K+ F+ RP+T +
Sbjct: 129 AEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--TKTFSYKRPSTFY 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,314,164
Number of Sequences: 369166
Number of extensions: 1111352
Number of successful extensions: 2891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2890
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)