Planarian EST Database

DrC_00809

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00809 TGTGCTGATCCTGTTTATATCTGGTGGGCATTGTGATGACAACCAATGTGTGCAAAACAG TGCATGCAGTTGCATTCGGAAATCAGACGGTGCCAGTATTGATCTGAATCCAATCACTGC TCCAGTCAATTTCAAGGATGATCAAGGTAATCCATGGCAATACAGTCCATGCTCTGCAAT GGTGTGTGGACAAGATAAATCAGCAACTTCTTCATTGTGTAAATTATATTATTCTGACTA CATGGAAATGGGAGCATTTAGTACTGCCAAATTCATACCAGATGGACCAACTTTAAATAT TCAATACACAGCAAATAGAGACTCAGTGTTTACATCAACTATGAAACTGGTTTGTAATGA AAATATTGATGCACAGGTGGATTATATTAGAGAGGATCCCGGCAATCCGGGATATCTGGA ATATCTCCAATTGCAATCCAAATATGCATGTTTCCGAACAATAAATCCAGTAAATCCAAC AAAAAATGGATTGAGTGTTGGAGATGTACTGTTGATAATATTTTTCATTGGATTACTGCT CTACTTCATTATTGGAATCCTCTTTATGAAATTCTATCGGCGTGTAGAAAATAATATTGA CCTCATTCCCAACCGTGAATTCTGGATTGTTTTACCATTCCTGTTTTCTGATGGAGTCAA ATTCGTAATGTACAAGACGGTATGGCGCAACAAGGCTCCCCAGCCATATACGCAAATATG AACACATATATAATATGATAATATTATTATTAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00809
         (753 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27020|VMAT_PI4HB  Matrix protein                               30   5.3  
sp|P54643|SP87_DICDI  Spore coat protein SP87 precursor (PL3...    30   7.0  
sp|Q9VVN6|CP312_DROME  Probable cytochrome P450 312a1 (CYPCC...    30   7.0  
sp|P16415|ZF36_HUMAN  Zinc finger protein ZFP-36                   30   9.1  
sp|Q83017|RPOA_LDVP  Replicase polyprotein 1ab (ORF1ab polyp...    30   9.1

>sp|P27020|VMAT_PI4HB Matrix protein
          Length = 382

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 260 STAKFIPDGPTLNIQYTANRDSVFTSTMKLVCNENIDAQVDYIREDPGN 406
           S+ KF    P LN + T  R       MK+ C+EN   +   I +DP N
Sbjct: 184 SSQKFKVPRPILNFRSTRMRGIHLEIIMKITCSENSPIRKTLITDDPEN 232

>sp|P54643|SP87_DICDI Spore coat protein SP87 precursor (PL3 protein)
          Length = 677

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
 Frame = +2

Query: 20  SGGH---CDDNQCVQNSACSCIRKSDGASIDLNPITAPVNFKDDQGNPWQYSPCSAMVCG 190
           SGGH   C D  C     C C    DG +    P     +     GN    +PCS + C 
Sbjct: 309 SGGHPDPCKDVTCPDGFHCEC---KDGKTAKCVPSPTTGSSSTSGGNT---NPCSNVNCP 362

Query: 191 QDKSATSSLCKLYYSDYMEMGAFSTAKFIPDGPT 292
                           Y E     TAK +P GPT
Sbjct: 363 D-------------GFYCECKDGKTAKCVPSGPT 383

>sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCCCXIIA1)
          Length = 510

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 182 VCGQDKSATSSLCKLYYSDYMEMGAFSTAKFIPDGPTLNIQYTAN 316
           VCG+DKS   S+ ++   +++E     T +  P GP    + TAN
Sbjct: 349 VCGKDKSEPISIEQVRQLEFLEACIKETLRMYPSGPLTARKATAN 393

>sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36
          Length = 582

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 522 NIINSTSPTLNPFFVGFTGFIVRKHAYLDCNWR 424
           +I+N  +P +NP   G  G +V  H+ L+CN R
Sbjct: 120 SIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIR 152

>sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase
            polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like
            cysteine proteinase (PCP1-alpha); Nsp1-beta papain-like
            cysteine proteinase (PCP1-beta); Nsp2 cysteine proteinase
            (CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like
            serine proteinase (3.4.21.-) (3CLSP) (Nsp4);
            Nonstructural protein 5-6-7 (Nsp5-6-7); Nonstructural
            protein 8 (Nsp8); RNA-directed RNA polymerase (RdRp)
            (Pol) (Nsp9); Helicase (Hel) (Nsp10); Nonstructural
            protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]
          Length = 3616

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +2

Query: 14   FISGGHCDDNQCVQNSACSCIRKSDGASIDLNPI-----TAPVNFKDDQGNPWQYSPCSA 178
            F+SGGH  D  C+            G  + LN +     ++PV+      +PW  +P S 
Sbjct: 1283 FVSGGHVADFVCL------------GLYVMLNFLISAWLSSPVSCGRGTNDPWCKNPFSY 1330

Query: 179  MVCGQDKSATSSLC 220
             V GQ     S LC
Sbjct: 1331 PVVGQGVMCNSHLC 1344

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,482,348
Number of Sequences: 369166
Number of extensions: 2077621
Number of successful extensions: 4924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4923
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00809

Planaria EST Database

DrC_00809

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail