Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N03
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07983|GUN1_BACSU Endoglucanase precursor (Endo-1,4-beta... 30 4.9
sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCC... 30 6.4
sp|P32949|LIP5_CANRU Lipase 5 precursor 30 8.4
sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36 30 8.4
>sp|P07983|GUN1_BACSU Endoglucanase precursor (Endo-1,4-beta-glucanase) (Cellulase)
Length = 499
Score = 30.4 bits (67), Expect = 4.9
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +1
Query: 37 QLHSCKSDGASIDLNPITAPVNFKDDQGNPWQYSPC--SEMVCGQ--DKSATSSLCKLYY 204
QLH + A++DL +TA + + N Q C ++M CG K T K
Sbjct: 373 QLHIKNNGNATVDLKDVTA--RYWYNVKNKGQNFDCDYAQMGCGNLTHKFVTLHKPKQGA 430
Query: 205 SDYMEMGAFSTAKFIPDGPTLNIQYTANRD 294
Y+E+G F T P T NIQ + D
Sbjct: 431 DTYLELG-FKTGTLSPGASTGNIQLRLHND 459
>sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCCCXIIA1)
Length = 510
Score = 30.0 bits (66), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 154 VCGQDKSATSSLCKLYYSDYMEMGAFSTAKFIPDGPTLNIQYTAN 288
VCG+DKS S+ ++ +++E T + P GP + TAN
Sbjct: 349 VCGKDKSEPISIEQVRQLEFLEACIKETLRMYPSGPLTARKATAN 393
>sp|P32949|LIP5_CANRU Lipase 5 precursor
Length = 549
Score = 29.6 bits (65), Expect = 8.4
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 15/108 (13%)
Frame = +1
Query: 139 PCSEMVCGQDKSATSSLCKLYYSD---------YMEMGAFSTAKFIPDGPTLNIQYTANR 291
P + G+ + S LC L ++ G + +P P T
Sbjct: 215 PSKVTIFGESAGSMSVLCHLLWNGGDNTYKGKPLFRAGIMQSGAMVPSDPVDGTYGTQIY 274
Query: 292 DSAFTST------MKLVCNENIDAQVDYIREASDNPGYLEYLQLQSKY 417
D+ ST KL C + Q + +D PG+L Y L+ Y
Sbjct: 275 DTLVASTGCSSASNKLACLRGLSTQA-LLDATNDTPGFLSYTSLRLSY 321
>sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36
Length = 582
Score = 29.6 bits (65), Expect = 8.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 494 NIINSTSPTLNPFFVGFTGFIVRKHAYLDCNWR 396
+I+N +P +NP G G +V H+ L+CN R
Sbjct: 120 SIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIR 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,185,746
Number of Sequences: 369166
Number of extensions: 1816446
Number of successful extensions: 4341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4341
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)