Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_O21
(546 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q17551|RPM1_CAEEL Ubiquitin ligase protein rpm-1 (Pam/hi... 35 0.091
sp|Q9Y5W7|SNX14_HUMAN Sorting nexin-14 32 0.77
sp|P27020|VMAT_PI4HB Matrix protein 32 1.3
sp|P27019|VMAT_PI4HA Matrix protein 32 1.3
sp|P54643|SP87_DICDI Spore coat protein SP87 precursor (PL3... 31 2.2
sp|P59511|ATS20_MOUSE ADAMTS-20 precursor (A disintegrin an... 30 3.8
sp|P59510|ATS20_HUMAN ADAMTS-20 precursor (A disintegrin an... 30 3.8
sp|P04008|TALA_POVLY Large T antigen 30 5.0
sp|P54708|AT12A_RAT Potassium-transporting ATPase alpha cha... 30 5.0
sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 pr... 29 6.5
>sp|Q17551|RPM1_CAEEL Ubiquitin ligase protein rpm-1 (Pam/highwire/rpm-1 protein)
(Regulator of presynaptic morphology protein 1) (Synapse
defective protein 3)
Length = 3766
Score = 35.4 bits (80), Expect = 0.091
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Frame = +1
Query: 106 GNTWQYSPCSAMVCGQGQPTTSS-----LCKSFHSYYMETGAFSTAKFIPDGPTLNIQYT 270
G + +SP + +C +GQP + + F S + T A AK++P G ++
Sbjct: 1930 GLSLSHSPTLSELCTKGQPPPAQSADLQFLREFLSGHTSTSAGFLAKWLPTGSVVDASKC 1989
Query: 271 ----SNRDLVFTS--TMKLVCNENIDAQVD 342
S+ DL+ T+KL+C + D +VD
Sbjct: 1990 QLSLSHDDLIVGKAVTLKLLCKDQYDREVD 2019
>sp|Q9Y5W7|SNX14_HUMAN Sorting nexin-14
Length = 886
Score = 32.3 bits (72), Expect = 0.77
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 358 SDYPRYLEYLQLQSKYACLPPIKSTTEIPNKNSTCIPNYSFIKIIKKTFSSFFIKL 525
S Y RYLE+ L+SK ++P+K NY F+K ++ F + KL
Sbjct: 552 SVYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKL 607
>sp|P27020|VMAT_PI4HB Matrix protein
Length = 382
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 220 STAKFIPDGPTLNIQYTSNRDLVFTSTMKLVCNENIDAQVDFIREDSDY-PRYLEYLQLQ 396
S+ KF P LN + T R + MK+ C+EN + I +D + P+ ++ L
Sbjct: 184 SSQKFKVPRPILNFRSTRMRGIHLEIIMKITCSENSPIRKTLITDDPENGPKASVWIHLC 243
Query: 397 SKYACLPPIK 426
+ Y PIK
Sbjct: 244 NLYKGRNPIK 253
>sp|P27019|VMAT_PI4HA Matrix protein
Length = 382
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 220 STAKFIPDGPTLNIQYTSNRDLVFTSTMKLVCNENIDAQVDFIRED-SDYPRYLEYLQLQ 396
S+ KF P LN + T R + MK+ C+EN + I +D + P+ ++ L
Sbjct: 184 SSQKFKVPRPVLNFRSTRMRGIHLEIIMKITCSENSPIRKTLITDDLENGPKASVWIHLC 243
Query: 397 SKYACLPPIK 426
+ Y PIK
Sbjct: 244 NLYKGRNPIK 253
>sp|P54643|SP87_DICDI Spore coat protein SP87 precursor (PL3 protein)
Length = 677
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = +1
Query: 7 CVQNSACSCIRKSDGASIDLNPITAPVNFSDDHGNTWQYSPCSAMVCGQGQPTTSSLCKS 186
C C C DG + P + S GNT +PCS + C G
Sbjct: 321 CPDGFHCEC---KDGKTAKCVPSPTTGSSSTSGGNT---NPCSNVNCPDG---------- 364
Query: 187 FHSYYMETGAFSTAKFIPDGPT 252
+Y E TAK +P GPT
Sbjct: 365 ---FYCECKDGKTAKCVPSGPT 383
>sp|P59511|ATS20_MOUSE ADAMTS-20 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20)
Length = 1906
Score = 30.0 bits (66), Expect = 3.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 70 PITAPVNFSDDHGNTWQ---YSPCSAMVCGQGQPTTSSLCKSFHSYYMET 210
P A V+ WQ +SPCSA CG G+ T LC ++H E+
Sbjct: 1192 PRPAAVSLCFSPCGEWQAGDWSPCSAS-CGHGKTTRRVLCVNYHQLVDES 1240
>sp|P59510|ATS20_HUMAN ADAMTS-20 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20)
Length = 1911
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 115 WQ---YSPCSAMVCGQGQPTTSSLCKSFH 192
WQ +SPCSA CG G+ T LC ++H
Sbjct: 1212 WQAGDWSPCSAS-CGHGKTTRQVLCMNYH 1239
>sp|P04008|TALA_POVLY Large T antigen
Length = 697
Score = 29.6 bits (65), Expect = 5.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 334 QVDFIREDSDYPRYLEYLQLQSKYACLPPIKSTTEIPNKNSTCIPNYSFIK---IIKKTF 504
+++F+ E P + QS Y C PP + TE + + YSF+ KT
Sbjct: 164 EIEFVEET---PSSCDGSSSQSSYTCTPPKRKKTEEKKPDDFPVCLYSFLSHAIYSNKTM 220
Query: 505 SSFFI 519
+SF I
Sbjct: 221 NSFLI 225
>sp|P54708|AT12A_RAT Potassium-transporting ATPase alpha chain 2 (Proton pump)
(Non-gastric H(+)/K(+) ATPase alpha subunit)
Length = 1036
Score = 29.6 bits (65), Expect = 5.0
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 130 CSA-MVCGQGQPTTSSLCKSFHSYYMETG 213
CS M+ GQ QP S SFH+ YME G
Sbjct: 530 CSTIMINGQEQPLDKSSADSFHTAYMELG 558
>sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 precursor
Length = 4007
Score = 29.3 bits (64), Expect = 6.5
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 QCVQNSAC-SCIRKSDGASIDLNPITAPVNFSDDHGNTWQYSPCSAMVCGQGQ-PTTSSL 177
Q N C C+ ++ G+ I +HG W SPCS C G+ T
Sbjct: 77 QIAANQCCPECVLRTPGSCHHEKKI-------HEHGTEWASSPCSVCSCNHGEVRCTPQP 129
Query: 178 CKSFHSYYMETGAFSTAKFIPDG 246
C + E FIP+G
Sbjct: 130 CPPLSCGHQELA------FIPEG 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,009,598
Number of Sequences: 369166
Number of extensions: 1478112
Number of successful extensions: 3491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3490
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)