Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_K23
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11 32 0.53
sp|P44888|SLT_HAEIN Putative soluble lytic murein transglyc... 30 2.0
sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36 30 2.6
sp|Q6DA23|RHAB_ERWCT Rhamnulokinase (Rhamnulose kinase) 29 5.8
sp|P08307|CSP_PLAFW Circumsporozoite protein precursor (CS) 28 7.6
sp|P13814|CSP_PLAFT Circumsporozoite protein precursor (CS) 28 7.6
sp|Q60324|Y018_METJA Hypothetical protein MJ0018 28 9.9
>sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11
Length = 506
Score = 32.3 bits (72), Expect = 0.53
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Frame = -2
Query: 186 YIVRKHAYLDCNWRYSRY-------PG--FPASSLI*STCASIFSLQTSFIVDVNG 46
Y+ ++HA+LD NWR+ R+ P FPA +T S++ +Q + V+G
Sbjct: 182 YLYKEHAHLDSNWRHGRFLVSTFNNPSIRFPADQDFRATLDSVYCVQYDDEIMVSG 237
>sp|P44888|SLT_HAEIN Putative soluble lytic murein transglycosylase precursor
Length = 593
Score = 30.4 bits (67), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 178 NNISSKSNKKWIECWRCTVDNIFHWITALLH 270
NN+S +S +KW W+ + D I W A L+
Sbjct: 212 NNLSFESYQKWANTWQLSEDEIKQWKIAFLN 242
>sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36
Length = 582
Score = 30.0 bits (66), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 243 NIINSTSPTLNPFFVGFTGYIVRKHAYLDCNWR 145
+I+N +P +NP G G +V H+ L+CN R
Sbjct: 120 SIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIR 152
>sp|Q6DA23|RHAB_ERWCT Rhamnulokinase (Rhamnulose kinase)
Length = 496
Score = 28.9 bits (63), Expect = 5.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 158 IAIGDIPDIPDFRHPL*YNPPVHQY 84
+A+G + D+ FRH L +N P+H+Y
Sbjct: 439 MALGAVTDLAAFRHMLTHNFPLHRY 463
>sp|P08307|CSP_PLAFW Circumsporozoite protein precursor (CS)
Length = 442
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1
Query: 280 DSNNEVEQ*SNE----KYYQQYISNTQSIFCWIYWIYCSETCIFGLQLEI 143
++NN V+ +NE K+ +QY+ Q+ W CS TC G+Q+ I
Sbjct: 343 NANNAVKNNNNEEPSDKHIEQYLKKIQNSLS-TEWSPCSVTCGNGIQVRI 391
>sp|P13814|CSP_PLAFT Circumsporozoite protein precursor (CS)
Length = 424
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1
Query: 280 DSNNEVEQ*SNE----KYYQQYISNTQSIFCWIYWIYCSETCIFGLQLEI 143
++NN V+ +NE K+ +QY+ Q+ W CS TC G+Q+ I
Sbjct: 325 NANNAVKNNNNEEPSDKHIEQYLKKIQNSLS-TEWSPCSVTCGNGIQVRI 373
>sp|Q60324|Y018_METJA Hypothetical protein MJ0018
Length = 524
Score = 28.1 bits (61), Expect = 9.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 423 WGALLRHTVLYITNLTPSENRNGK-TIQNSRLG 328
WG+ + + IT L+ +E RNGK TI+NS +G
Sbjct: 453 WGSDMTLNKVNITKLSINEIRNGKLTIKNSEIG 485
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,082,175
Number of Sequences: 369166
Number of extensions: 1229336
Number of successful extensions: 2833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2832
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)