Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_B21
(588 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54643|SP87_DICDI Spore coat protein SP87 precursor (PL3... 36 0.062
sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab (ORF1ab polyp... 33 0.69
sp|Q17551|RPM1_CAEEL Ubiquitin ligase protein rpm-1 (Pam/hi... 32 1.2
sp|Q9Y5W7|SNX14_HUMAN Sorting nexin-14 30 3.4
sp|Q9L4F0|UVSE_BACCR UV DNA damage endonuclease (UV-endonuc... 30 5.8
sp|P27020|VMAT_PI4HB Matrix protein 29 7.6
sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog (D-PTX1) 29 7.6
sp|Q96G01|BICD1_HUMAN Cytoskeleton-like bicaudal D protein ... 29 7.6
sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab (ORF1ab polyp... 29 7.6
sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor prec... 29 9.9
>sp|P54643|SP87_DICDI Spore coat protein SP87 precursor (PL3 protein)
Length = 677
Score = 36.2 bits (82), Expect = 0.062
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Frame = +2
Query: 14 SGGH---CDDNQCVQNSACSCIRKSDGASIDLNPITAPVNFSDDQGNPWQYSPCSAMVCG 184
SGGH C D C C C DG + P + S GN +PCS + C
Sbjct: 309 SGGHPDPCKDVTCPDGFHCEC---KDGKTAKCVPSPTTGSSSTSGGNT---NPCSNVNCP 362
Query: 185 QGKPATSSLCKLYNLYYMEMGAFSTAKFIPDGPT 286
G +Y E TAK +P GPT
Sbjct: 363 DG-------------FYCECKDGKTAKCVPSGPT 383
>sp|Q83017|RPOA_LDVP Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase
polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like
cysteine proteinase (PCP1-alpha); Nsp1-beta papain-like
cysteine proteinase (PCP1-beta); Nsp2 cysteine proteinase
(CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like
serine proteinase (3.4.21.-) (3CLSP) (Nsp4);
Nonstructural protein 5-6-7 (Nsp5-6-7); Nonstructural
protein 8 (Nsp8); RNA-directed RNA polymerase (RdRp)
(Pol) (Nsp9); Helicase (Hel) (Nsp10); Nonstructural
protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]
Length = 3616
Score = 32.7 bits (73), Expect = 0.69
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +2
Query: 8 FISGGHCDDNQCVQNSACSCIRKSDGASIDLNPI-----TAPVNFSDDQGNPWQYSPCSA 172
F+SGGH D C+ G + LN + ++PV+ +PW +P S
Sbjct: 1283 FVSGGHVADFVCL------------GLYVMLNFLISAWLSSPVSCGRGTNDPWCKNPFSY 1330
Query: 173 MVCGQGKPATSSLC 214
V GQG S LC
Sbjct: 1331 PVVGQGVMCNSHLC 1344
>sp|Q17551|RPM1_CAEEL Ubiquitin ligase protein rpm-1 (Pam/highwire/rpm-1 protein)
(Regulator of presynaptic morphology protein 1) (Synapse
defective protein 3)
Length = 3766
Score = 32.0 bits (71), Expect = 1.2
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Frame = +2
Query: 137 QGNPWQYSPCSAMVCGQGKPATSSLCKLYNLYYMEMGAFST-----AKFIPDGPTLNI-- 295
+G +SP + +C +G+P + L L G ST AK++P G ++
Sbjct: 1929 KGLSLSHSPTLSELCTKGQPPPAQSADLQFLREFLSGHTSTSAGFLAKWLPTGSVVDASK 1988
Query: 296 -QYTANRDSVFTS---TVKLVCNENIDAQVD 376
Q + + D + T+KL+C + D +VD
Sbjct: 1989 CQLSLSHDDLIVGKAVTLKLLCKDQYDREVD 2019
>sp|Q9Y5W7|SNX14_HUMAN Sorting nexin-14
Length = 886
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 407 YLDYLQLQSKYACFRTIKSTTEIPNKNSTCIPNYSFIKIITKTFKSFFMKL 559
YL++ L+SK F ++P+K NY F+K + F+ + KL
Sbjct: 557 YLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKL 607
>sp|Q9L4F0|UVSE_BACCR UV DNA damage endonuclease (UV-endonuclease) (UVED)
Length = 317
Score = 29.6 bits (65), Expect = 5.8
Identities = 10/40 (25%), Positives = 27/40 (67%)
Frame = +3
Query: 378 LLERIPAIWDIWTISNCNPNMHVSEQ*KAQRKYQIRTRHV 497
L E +PAI++ W+ +N +P +H+S +++++++ ++
Sbjct: 224 LEELLPAIFETWSHTNISPKVHISSP-RSEKEFRAHAEYI 262
>sp|P27020|VMAT_PI4HB Matrix protein
Length = 382
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 254 STAKFIPDGPTLNIQYTANRDSVFTSTVKLVCNENIDAQVDFIREDPGN 400
S+ KF P LN + T R +K+ C+EN + I +DP N
Sbjct: 184 SSQKFKVPRPILNFRSTRMRGIHLEIIMKITCSENSPIRKTLITDDPEN 232
>sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog (D-PTX1)
Length = 509
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 291 FKVGPSGMNLAVLNA---PISM*YKLYNLHNEEVAGFPCPHT 175
F G SG+ +++ NA P SM L N N G PCP+T
Sbjct: 397 FNTGASGVAVSMNNASMLPGSMGSSLSNTSNVGAVGAPCPYT 438
>sp|Q96G01|BICD1_HUMAN Cytoskeleton-like bicaudal D protein homolog 1
Length = 975
Score = 29.3 bits (64), Expect = 7.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 104 PITAPVNFSDDQGNPWQYSPCSAMVCGQGKPATSSLCKLYNLYYMEMGAFSTAKFIPDGP 283
P T + S Q+SP +C Q +P TS L NL + ST F+ GP
Sbjct: 842 PQTPNIRVSSGTQRKRQFSPS---LCDQSRPRTSGASYLQNLLRVPPDPTSTESFLLKGP 898
>sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase
polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like
cysteine proteinase (PCP1-alpha); Nsp1-beta papain-like
cysteine proteinase (PCP1-beta); Nsp2 cysteine proteinase
(CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like
serine proteinase (3.4.21.-) (3CLSP) (Nsp4);
Nonstructural protein 5-6-7 (Nsp5-6-7); Nonstructural
protein 8 (Nsp8); RNA-directed RNA polymerase (RdRp)
(Pol) (Nsp9); Helicase (Hel) (Nsp10); Nonstructural
protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]
Length = 3637
Score = 29.3 bits (64), Expect = 7.6
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 8 FISGGHCDDNQCVQNSACSCIRKSDGASIDLNPI-----TAPVNFSDDQGNPWQYSPCSA 172
F+SGG D C+ G + LN + ++PV+ +PW +P S
Sbjct: 1281 FVSGGQIADFVCL------------GLYVLLNFLLSAWLSSPVSCGRGTNDPWCRNPFSY 1328
Query: 173 MVCGQGKPATSSLC 214
V GQG S LC
Sbjct: 1329 PVVGQGVMCNSHLC 1342
>sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor precursor (GLP-2 receptor)
(GLP-2-R) (GLP-2R)
Length = 553
Score = 28.9 bits (63), Expect = 9.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Frame = +2
Query: 341 LVCNENIDAQVDFIREDPGNLG-----YLDYLQLQSKYACFR---------TIKSTTEIP 478
+ CN D V + PGN+ YL + +S +R TI++ T+I
Sbjct: 94 IFCNGTFDQYVCWPHSSPGNVSVPCPSYLPWWSEESSGRAYRHCLAQGTWQTIENATDIW 153
Query: 479 NKNSTCIPNYSF 514
+S C N+SF
Sbjct: 154 QDDSECSENHSF 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,385,609
Number of Sequences: 369166
Number of extensions: 1680401
Number of successful extensions: 3841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3838
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)