Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_C14
(247 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11 32 0.59
sp|P44888|SLT_HAEIN Putative soluble lytic murein transglyc... 30 1.3
sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36 30 1.7
sp|P13814|CSP_PLAFT Circumsporozoite protein precursor (CS) 29 3.8
sp|P51654|GPC3_HUMAN Glypican-3 precursor (Intestinal prote... 28 5.0
sp|P08307|CSP_PLAFW Circumsporozoite protein precursor (CS) 28 5.0
sp|Q57390|LIPA_PELCA Lipoyl synthase (Lipoic acid synthase)... 28 8.6
>sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11
Length = 506
Score = 31.6 bits (70), Expect = 0.59
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 126 YIVRKHAYLDCNWRYSRYL 70
Y+ ++HA+LD NWR+ R+L
Sbjct: 182 YLYKEHAHLDSNWRHGRFL 200
>sp|P44888|SLT_HAEIN Putative soluble lytic murein transglycosylase precursor
Length = 593
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 118 NNISSKSNKKWIECWRCTVDNIFHWITALLH 210
NN+S +S +KW W+ + D I W A L+
Sbjct: 212 NNLSFESYQKWANTWQLSEDEIKQWKIAFLN 242
>sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36
Length = 582
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 183 NIINSTSPTLNPFFVGFTGYIVRKHAYLDCNWR 85
+I+N +P +NP G G +V H+ L+CN R
Sbjct: 120 SIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIR 152
>sp|P13814|CSP_PLAFT Circumsporozoite protein precursor (CS)
Length = 424
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -1
Query: 220 DSNNEVEQ*SNE----KYYQQYISNTQSIFCWIYWIYCSETCIFGLQLEIFQISRN 65
++NN V+ +NE K+ +QY+ Q+ W CS TC G+Q+ I S N
Sbjct: 325 NANNAVKNNNNEEPSDKHIEQYLKKIQNSLS-TEWSPCSVTCGNGIQVRIKPGSAN 379
>sp|P51654|GPC3_HUMAN Glypican-3 precursor (Intestinal protein OCI-5) (GTR2-2) (MXR7)
Length = 580
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -1
Query: 187 EKYYQQYISNTQSIFCWIYWIYCSETCIFGLQLEIFQ----ISRNAGILSNII 41
+KY+++YI + + + +Y IY E + GL I + +NAG L+ I
Sbjct: 293 DKYWREYILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQKNAGKLTTTI 345
>sp|P08307|CSP_PLAFW Circumsporozoite protein precursor (CS)
Length = 442
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1
Query: 220 DSNNEVEQ*SNE----KYYQQYISNTQSIFCWIYWIYCSETCIFGLQLEI 83
++NN V+ +NE K+ +QY+ Q+ W CS TC G+Q+ I
Sbjct: 343 NANNAVKNNNNEEPSDKHIEQYLKKIQNSLS-TEWSPCSVTCGNGIQVRI 391
>sp|Q57390|LIPA_PELCA Lipoyl synthase (Lipoic acid synthase) (Lipoate synthase)
(Lipoyl-acyl-carrier protein synthase) (Sulfur insertion
protein lipA) (Lip-syn)
Length = 310
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 11 VCNENIDAQVDYIREDPGIPRYLEYLQLQSKYACFRTIYPVNPTKNGLSVG 163
V N N++ E RY E L+L + F+ YP PTK+GL +G
Sbjct: 179 VFNHNLETVPRLYAESRPGARYHESLRLLQR---FKETYPGIPTKSGLMLG 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,104,785
Number of Sequences: 369166
Number of extensions: 568360
Number of successful extensions: 1633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)