Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_P22
(574 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11 32 1.5
sp|P44888|SLT_HAEIN Putative soluble lytic murein transglyc... 30 3.3
sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36 30 4.3
sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCC... 30 4.3
sp|P27020|VMAT_PI4HB Matrix protein 29 9.5
sp|O22815|MLO5_ARATH MLO-like protein 5 (AtMlo5) 29 9.5
sp|P13814|CSP_PLAFT Circumsporozoite protein precursor (CS) 29 9.5
>sp|Q09855|POF11_SCHPO F-box/WD-repeat protein pof11
Length = 506
Score = 31.6 bits (70), Expect = 1.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 313 YIVRKHAYLDCNWRYSRYL 257
Y+ ++HA+LD NWR+ R+L
Sbjct: 182 YLYKEHAHLDSNWRHGRFL 200
>sp|P44888|SLT_HAEIN Putative soluble lytic murein transglycosylase precursor
Length = 593
Score = 30.4 bits (67), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 305 NNISSKSNKKWIECWRCTVDNIFHWITALLH 397
NN+S +S +KW W+ + D I W A L+
Sbjct: 212 NNLSFESYQKWANTWQLSEDEIKQWKIAFLN 242
>sp|P16415|ZF36_HUMAN Zinc finger protein ZFP-36
Length = 582
Score = 30.0 bits (66), Expect = 4.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 370 NIINSTSPTLNPFFVGFTGYIVRKHAYLDCNWR 272
+I+N +P +NP G G +V H+ L+CN R
Sbjct: 120 SIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIR 152
>sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCCCXIIA1)
Length = 510
Score = 30.0 bits (66), Expect = 4.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 30 VCGQDKSATSSLCKLYYSDYMEMGAFSTAKFIPDGPTLNIQYTAN 164
VCG+DKS S+ ++ +++E T + P GP + TAN
Sbjct: 349 VCGKDKSEPISIEQVRQLEFLEACIKETLRMYPSGPLTARKATAN 393
>sp|P27020|VMAT_PI4HB Matrix protein
Length = 382
Score = 28.9 bits (63), Expect = 9.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 108 STAKFIPDGPTLNIQYTANRDLVFTSTVKLVCNENIDAQVDYIREDP 248
S+ KF P LN + T R + +K+ C+EN + I +DP
Sbjct: 184 SSQKFKVPRPILNFRSTRMRGIHLEIIMKITCSENSPIRKTLITDDP 230
>sp|O22815|MLO5_ARATH MLO-like protein 5 (AtMlo5)
Length = 501
Score = 28.9 bits (63), Expect = 9.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 131 IWYEFGSTKCSHFHVVRII 75
IWYEFG C H H II
Sbjct: 378 IWYEFGLRSCFHHHFALII 396
>sp|P13814|CSP_PLAFT Circumsporozoite protein precursor (CS)
Length = 424
Score = 28.9 bits (63), Expect = 9.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 407 DSNNEVEQ*SNE----KYYQQYISNTQSIFCWIYWIYCSETCIFGLQLEIFQISRN 252
++NN V+ +NE K+ +QY+ Q+ W CS TC G+Q+ I S N
Sbjct: 325 NANNAVKNNNNEEPSDKHIEQYLKKIQNSLS-TEWSPCSVTCGNGIQVRIKPGSAN 379
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,466,555
Number of Sequences: 369166
Number of extensions: 1571189
Number of successful extensions: 3579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3579
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)