Planaria EST Database

DrC_00332

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00332
         (1340 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z1N5|UAP56_MOUSE  Spliceosome RNA helicase Bat1 (DEAD-b...   651   0.0  
sp|Q13838|UAP56_HUMAN  Spliceosome RNA helicase BAT1 (DEAD-b...   651   0.0  
sp|Q5WR10|UAP56_CANFA  Spliceosome RNA helicase BAT1 (DEAD-b...   651   0.0  
sp|Q27268|UAP56_DROME  ATP-dependent RNA helicase WM6 (DEAD-...   649   0.0  
sp|Q5ZHZ0|UAP56_CHICK  Spliceosome RNA helicase BAT1 (DEAD-b...   648   0.0  
sp|Q8VDW0|DDX39_MOUSE  ATP-dependent helicase DDX39 (DEAD-bo...   643   0.0  
sp|Q5U216|DDX39_RAT  ATP-dependent helicase DDX39 (DEAD-box ...   642   0.0  
sp|O00148|DDX39_HUMAN  ATP-dependent helicase DDX39 (DEAD-bo...   640   0.0  
sp|Q18212|UAP56_CAEEL  Spliceosome RNA helicase BAT1 homolog...   592   e-168
sp|O13792|UAP56_SCHPO  ATP-dependent RNA helicase uap56           544   e-154

>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein) (HLA-B associated transcript 1)
 sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein) (ATP-dependent RNA helicase p47)
          Length = 428

 Score =  651 bits (1679), Expect = 0.0
 Identities = 314/400 (78%), Positives = 362/400 (90%)
 Frame = +2

Query: 5    ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
            E    K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28   EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87

Query: 185  QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
            QAKSGMGKTAVFVLATLQQL+    G   VLV+CHTRELAFQISKEYERFSKYM N+ V+
Sbjct: 88   QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146

Query: 365  VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
            VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ + 
Sbjct: 147  VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206

Query: 545  MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
            MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207  MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266

Query: 725  LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDR 904
            +K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL  LL EQNFPAIAIHR M QE+R
Sbjct: 267  VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326

Query: 905  ISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 1084
            +SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGL
Sbjct: 327  LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386

Query: 1085 AITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            AITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 387  AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426

>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein) (ATP-dependent RNA helicase p47)
            (HLA-B associated transcript-1)
 sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein)
 sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein)
 sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein)
 sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein)
          Length = 428

 Score =  651 bits (1679), Expect = 0.0
 Identities = 314/400 (78%), Positives = 362/400 (90%)
 Frame = +2

Query: 5    ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
            E    K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28   EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87

Query: 185  QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
            QAKSGMGKTAVFVLATLQQL+    G   VLV+CHTRELAFQISKEYERFSKYM N+ V+
Sbjct: 88   QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146

Query: 365  VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
            VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ + 
Sbjct: 147  VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206

Query: 545  MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
            MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207  MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266

Query: 725  LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDR 904
            +K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL  LL EQNFPAIAIHR M QE+R
Sbjct: 267  VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326

Query: 905  ISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 1084
            +SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGL
Sbjct: 327  LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386

Query: 1085 AITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            AITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 387  AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426

>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein)
          Length = 428

 Score =  651 bits (1679), Expect = 0.0
 Identities = 314/400 (78%), Positives = 362/400 (90%)
 Frame = +2

Query: 5    ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
            E    K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28   EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87

Query: 185  QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
            QAKSGMGKTAVFVLATLQQL+    G   VLV+CHTRELAFQISKEYERFSKYM N+ V+
Sbjct: 88   QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146

Query: 365  VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
            VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ + 
Sbjct: 147  VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206

Query: 545  MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
            MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207  MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266

Query: 725  LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDR 904
            +K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL  LL EQNFPAIAIHR M QE+R
Sbjct: 267  VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326

Query: 905  ISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 1084
            +SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGL
Sbjct: 327  LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386

Query: 1085 AITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            AITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 387  AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426

>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
          Length = 424

 Score =  649 bits (1673), Expect = 0.0
 Identities = 305/396 (77%), Positives = 360/396 (90%)
 Frame = +2

Query: 20   KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
            K VKG+YVS+HSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+L MD+LCQAKSG
Sbjct: 29   KDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 88

Query: 200  MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
            MGKTAVFVLATLQQL+ +D+ TC VLV+CHTRELAFQISKEYERFSKYM  + V+VF+GG
Sbjct: 89   MGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGG 148

Query: 380  VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
            + I+ D E LK   P ++V TPGR+L L+R K LNLK +KHF+LDECDKML+ + MR DV
Sbjct: 149  MAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDV 208

Query: 560  QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
            QE+F+ TPH KQVMMFSATLSK+IRP+CKKFMQDP+E+++DD++KLTLHGL+QHY+ +KE
Sbjct: 209  QEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKE 268

Query: 740  NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQ 919
            NEKN+KLFELLD L+FNQV++FVKSVQRC+AL  LL EQNFPAI IHR MTQE+R++RYQ
Sbjct: 269  NEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQ 328

Query: 920  AFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 1099
             FK+FQKR+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+
Sbjct: 329  QFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 388

Query: 1100 SDENDAKILNDVQNRFEVNISELPDVVEITTYMEER 1207
            SDENDAKILN+VQ+RF+VNISELP+ ++++TY+E R
Sbjct: 389  SDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424

>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa U2AF65
            associated protein)
          Length = 428

 Score =  648 bits (1672), Expect = 0.0
 Identities = 312/400 (78%), Positives = 362/400 (90%)
 Frame = +2

Query: 5    ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
            E    K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28   EAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87

Query: 185  QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
            QAKSGMGKTAVFVLATLQQL+    G   VLV+CHTRELAFQISKEYERFSKYM ++ V+
Sbjct: 88   QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146

Query: 365  VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
            VF+GG+ ++ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ + 
Sbjct: 147  VFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206

Query: 545  MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
            MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207  MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266

Query: 725  LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDR 904
            +K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL  LL EQNFPAIAIHR M QE+R
Sbjct: 267  VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326

Query: 905  ISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 1084
            +SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGL
Sbjct: 327  LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386

Query: 1085 AITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            AITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 387  AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426

>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
          Length = 427

 Score =  643 bits (1658), Expect = 0.0
 Identities = 305/395 (77%), Positives = 364/395 (92%)
 Frame = +2

Query: 20   KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
            K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLCQAKSG
Sbjct: 32   KDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 91

Query: 200  MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
            MGKTAVFVLATLQQ++  + G   VLV+CHTRELAFQISKEYERFSKYM ++ VSVF+GG
Sbjct: 92   MGKTAVFVLATLQQIEPVN-GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150

Query: 380  VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
            + I+ D + LKK+ P ++V TPGR+L LVR ++LNL++VKHF+LDECDKML+ + MR DV
Sbjct: 151  LSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV 210

Query: 560  QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
            QE+F+LTPH+KQ MMFSATLSKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K+
Sbjct: 211  QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270

Query: 740  NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQ 919
            +EKNRKLF+LLD L+FNQV++FVKSVQRC+AL  LL EQNFPAIAIHR M QE+R+SRYQ
Sbjct: 271  SEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQ 330

Query: 920  AFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 1099
             FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+
Sbjct: 331  QFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFV 390

Query: 1100 SDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 391  SDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425

>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
            helicase, DECD variant of DEAD box family)
          Length = 427

 Score =  642 bits (1657), Expect = 0.0
 Identities = 305/395 (77%), Positives = 364/395 (92%)
 Frame = +2

Query: 20   KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
            K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLCQAKSG
Sbjct: 32   KDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 91

Query: 200  MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
            MGKTAVFVLATLQQ++  + G   VLV+CHTRELAFQISKEYERFSKYM ++ VSVF+GG
Sbjct: 92   MGKTAVFVLATLQQIEPIN-GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150

Query: 380  VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
            + I+ D + LKK+ P ++V TPGR+L LVR ++LNL++VKHF+LDECDKML+ + MR DV
Sbjct: 151  LSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV 210

Query: 560  QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
            QE+F+LTPH+KQ MMFSATLSKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K+
Sbjct: 211  QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270

Query: 740  NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQ 919
            +EKNRKLF+LLD L+FNQV++FVKSVQRC+AL  LL EQNFPAIAIHR M QE+R+SRYQ
Sbjct: 271  SEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQ 330

Query: 920  AFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 1099
             FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+
Sbjct: 331  QFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFV 390

Query: 1100 SDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 391  SDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425

>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
            helicase URH49)
          Length = 427

 Score =  640 bits (1652), Expect = 0.0
 Identities = 305/395 (77%), Positives = 363/395 (91%)
 Frame = +2

Query: 20   KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
            K +KGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLCQAKSG
Sbjct: 32   KDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 91

Query: 200  MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
            MGKTAVFVLATLQQ++  + G   VLV+CHTRELAFQISKEYERFSKYM ++ VSVF+GG
Sbjct: 92   MGKTAVFVLATLQQIEPVN-GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150

Query: 380  VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
            + I+ D E LKK+ P ++V TPGR+L LVR ++ +LK+VKHF+LDECDKML+ + MR DV
Sbjct: 151  LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV 210

Query: 560  QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
            QE+F+LTPH+KQ MMFSATLSK+IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K+
Sbjct: 211  QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270

Query: 740  NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQ 919
            +EKNRKLF+LLD L+FNQVI+FVKSVQRC+AL  LL EQNFPAIAIHR M QE+R+SRYQ
Sbjct: 271  SEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQ 330

Query: 920  AFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 1099
             FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+
Sbjct: 331  QFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 390

Query: 1100 SDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 1204
            SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 391  SDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425

>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
          Length = 425

 Score =  592 bits (1525), Expect = e-168
 Identities = 280/393 (71%), Positives = 341/393 (86%)
 Frame = +2

Query: 29   KGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGK 208
            KG+Y S+HSSGFRDFLLKPE+LRAI DCGFEHPSEVQHECIPQAIL MDV+CQAKSGMGK
Sbjct: 32   KGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGK 91

Query: 209  TAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGGVPI 388
            TAVFV+ TLQQL+  D G   V+ +CHTRELAFQISKEYERFSKY+  + V+VF+GG+ I
Sbjct: 92   TAVFVITTLQQLEPVD-GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAI 150

Query: 389  RNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEV 568
            + D E+L    P ++V TPGR+L L R   L L  VK+F+LDECDKM+ +  MR DVQE+
Sbjct: 151  KKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEI 210

Query: 569  FKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEK 748
             K+TP QKQVMMFSATL KE+R +CK+FMQDP+E+++DD++KLTLHGL+QHY+K+KE EK
Sbjct: 211  VKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEK 270

Query: 749  NRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFK 928
            NR+L  LLD L+FNQV++FVK+V+RC AL  LL EQNFP+IAIHRQM QE+R+SRYQAFK
Sbjct: 271  NRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFK 330

Query: 929  NFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDE 1108
            +FQKR+LVAT+LFGRGMDIERVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLAITF+SDE
Sbjct: 331  DFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDE 390

Query: 1109 NDAKILNDVQNRFEVNISELPDVVEITTYMEER 1207
            NDAK LN VQ+RF+++I+ELP+ ++++TY+E R
Sbjct: 391  NDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 423

>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
          Length = 434

 Score =  544 bits (1402), Expect = e-154
 Identities = 267/392 (68%), Positives = 324/392 (82%), Gaps = 2/392 (0%)
 Frame = +2

Query: 29   KGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGK 208
            KGSYV +HS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+IL  DVLCQAKSGMGK
Sbjct: 42   KGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGK 101

Query: 209  TAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGGVPI 388
            TAVFVL+TLQQ++  D G   VLVLCHTRELAFQI  EY RFSKY+ ++  +VFYGG+ I
Sbjct: 102  TAVFVLSTLQQIEPVD-GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINI 160

Query: 389  RNDIE--KLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQ 562
            + D+E  K K   P ++VATPGRL  LVR+K L + SVKHF+LDECDK+L++V MR D+Q
Sbjct: 161  KQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQ 220

Query: 563  EVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKEN 742
            EVF+ TP QKQVMMFSATLS EIRPICKKFMQ+PLEI++DD++KLTLHGL+QHY+K++E 
Sbjct: 221  EVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEK 280

Query: 743  EKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQA 922
             KNRK+ +LLD L+FNQV++FVKSV R   L  LL E NFP+I IH  + QE+RI RY+A
Sbjct: 281  AKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKA 340

Query: 923  FKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFIS 1102
            FK+F KR+ VAT++FGRG+DIERVNIV NYDMP+  D+YLHRV RAGRFGTKGLAITF S
Sbjct: 341  FKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSS 400

Query: 1103 DENDAKILNDVQNRFEVNISELPDVVEITTYM 1198
             E D++IL+ +Q RFEVNI+ELPD +++ +YM
Sbjct: 401  SEEDSQILDKIQERFEVNITELPDEIDVGSYM 432

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,547,497
Number of Sequences: 369166
Number of extensions: 3094211
Number of successful extensions: 8640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7980
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 15702003080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00332

  1. Dr_sW_008_M09
  2. Dr_sW_023_O16
  3. Dr_sW_013_L10
  4. Dr_sW_025_H18
  5. Dr_sW_020_O05
  6. Dr_sW_005_H10
  7. Dr_sW_006_I21
  8. Dr_sW_020_I16
  9. Dr_sW_014_D07