Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L10
(682 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 351 1e-96
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 351 1e-96
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 351 1e-96
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 351 1e-96
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 349 3e-96
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 346 4e-95
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 346 4e-95
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 345 5e-95
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 328 1e-89
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 285 8e-77
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 351 bits (900), Expect = 1e-96
Identities = 166/203 (81%), Positives = 194/203 (95%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD
Sbjct: 224 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 283
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVA
Sbjct: 284 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 343
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
TNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDV
Sbjct: 344 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 403
Query: 543 QNRFEVNISELPDVVEITTYMEE 611
Q+RFEVNISELPD ++I++Y+E+
Sbjct: 404 QDRFEVNISELPDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 351 bits (900), Expect = 1e-96
Identities = 166/203 (81%), Positives = 194/203 (95%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD
Sbjct: 224 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 283
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVA
Sbjct: 284 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 343
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
TNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDV
Sbjct: 344 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 403
Query: 543 QNRFEVNISELPDVVEITTYMEE 611
Q+RFEVNISELPD ++I++Y+E+
Sbjct: 404 QDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 351 bits (900), Expect = 1e-96
Identities = 166/203 (81%), Positives = 194/203 (95%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD
Sbjct: 224 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 283
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVA
Sbjct: 284 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 343
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
TNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDV
Sbjct: 344 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 403
Query: 543 QNRFEVNISELPDVVEITTYMEE 611
Q+RFEVNISELPD ++I++Y+E+
Sbjct: 404 QDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 351 bits (900), Expect = 1e-96
Identities = 166/203 (81%), Positives = 194/203 (95%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD
Sbjct: 224 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 283
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVA
Sbjct: 284 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 343
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
TNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDV
Sbjct: 344 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 403
Query: 543 QNRFEVNISELPDVVEITTYMEE 611
Q+RFEVNISELPD ++I++Y+E+
Sbjct: 404 QDRFEVNISELPDEIDISSYIEQ 426
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 349 bits (896), Expect = 3e-96
Identities = 163/204 (79%), Positives = 194/204 (95%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATLSK+IRP+CKKFMQDP+E+++DD++KLTLHGL+QHY+ +KENEKN+KLFELLD
Sbjct: 221 VMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLD 280
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVKSVQRC+AL LL EQNFPAI IHR MTQE+R++RYQ FK+FQKR+LVA
Sbjct: 281 VLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 340
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILN+V
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400
Query: 543 QNRFEVNISELPDVVEITTYMEER 614
Q+RF+VNISELP+ ++++TY+E R
Sbjct: 401 QDRFDVNISELPEEIDLSTYIEGR 424
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 346 bits (887), Expect = 4e-95
Identities = 160/202 (79%), Positives = 194/202 (96%)
Frame = +3
Query: 6 MMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDE 185
MMFSATLSKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD
Sbjct: 224 MMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDV 283
Query: 186 LQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVAT 365
L+FNQV++FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVAT
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343
Query: 366 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQ 545
NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403
Query: 546 NRFEVNISELPDVVEITTYMEE 611
+RFEVN++ELP+ ++I+TY+E+
Sbjct: 404 DRFEVNVAELPEEIDISTYIEQ 425
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 346 bits (887), Expect = 4e-95
Identities = 160/202 (79%), Positives = 194/202 (96%)
Frame = +3
Query: 6 MMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDE 185
MMFSATLSKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD
Sbjct: 224 MMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDV 283
Query: 186 LQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVAT 365
L+FNQV++FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVAT
Sbjct: 284 LEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343
Query: 366 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQ 545
NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQ 403
Query: 546 NRFEVNISELPDVVEITTYMEE 611
+RFEVN++ELP+ ++I+TY+E+
Sbjct: 404 DRFEVNVAELPEEIDISTYIEQ 425
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 345 bits (886), Expect = 5e-95
Identities = 161/202 (79%), Positives = 194/202 (96%)
Frame = +3
Query: 6 MMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDE 185
MMFSATLSK+IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD
Sbjct: 224 MMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDV 283
Query: 186 LQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVAT 365
L+FNQVI+FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVAT
Sbjct: 284 LEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVAT 343
Query: 366 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQ 545
NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ
Sbjct: 344 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 403
Query: 546 NRFEVNISELPDVVEITTYMEE 611
+RFEVN++ELP+ ++I+TY+E+
Sbjct: 404 DRFEVNVAELPEEIDISTYIEQ 425
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 328 bits (840), Expect = 1e-89
Identities = 152/204 (74%), Positives = 189/204 (92%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATL KE+R +CK+FMQDP+E+++DD++KLTLHGL+QHY+K+KE EKNR+L LLD
Sbjct: 220 VMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLD 279
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVK+V+RC AL LL EQNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVA
Sbjct: 280 ALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVA 339
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
T+LFGRGMDIERVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLAITF+SDENDAK LN V
Sbjct: 340 TDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSV 399
Query: 543 QNRFEVNISELPDVVEITTYMEER 614
Q+RF+++I+ELP+ ++++TY+E R
Sbjct: 400 QDRFDISITELPEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 285 bits (729), Expect = 8e-77
Identities = 136/201 (67%), Positives = 170/201 (84%)
Frame = +3
Query: 3 VMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLD 182
VMMFSATLS EIRPICKKFMQ+PLEI++DD++KLTLHGL+QHY+K++E KNRK+ +LLD
Sbjct: 232 VMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLD 291
Query: 183 ELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVA 362
L+FNQV++FVKSV R L LL E NFP+I IH + QE+RI RY+AFK+F KR+ VA
Sbjct: 292 SLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVA 351
Query: 363 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDV 542
T++FGRG+DIERVNIV NYDMP+ D+YLHRV RAGRFGTKGLAITF S E D++IL+ +
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKI 411
Query: 543 QNRFEVNISELPDVVEITTYM 605
Q RFEVNI+ELPD +++ +YM
Sbjct: 412 QERFEVNITELPDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,312,344
Number of Sequences: 369166
Number of extensions: 1414958
Number of successful extensions: 4101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3925
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)