Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I21
(525 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 259 2e-69
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 259 2e-69
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 259 2e-69
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 259 2e-69
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 259 3e-69
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 258 5e-69
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 258 5e-69
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 258 6e-69
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 243 2e-64
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 199 3e-51
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 259 bits (663), Expect = 2e-69
Identities = 125/151 (82%), Positives = 142/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 276 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 335
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 336 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 396 DAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 259 bits (663), Expect = 2e-69
Identities = 125/151 (82%), Positives = 142/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 276 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 335
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 336 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 396 DAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 259 bits (663), Expect = 2e-69
Identities = 125/151 (82%), Positives = 142/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 276 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 335
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 336 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 396 DAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 259 bits (663), Expect = 2e-69
Identities = 125/151 (82%), Positives = 142/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 276 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 335
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 336 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 396 DAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 259 bits (662), Expect = 3e-69
Identities = 124/151 (82%), Positives = 143/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQVI+FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 275 RKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKD 334
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 335 FQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 394
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 395 DAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 258 bits (660), Expect = 5e-69
Identities = 122/151 (80%), Positives = 143/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQV++FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 275 RKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKD 334
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDEN
Sbjct: 335 FQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 395 DAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 258 bits (660), Expect = 5e-69
Identities = 122/151 (80%), Positives = 143/151 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RKLF+LLD L+FNQV++FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+
Sbjct: 275 RKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKD 334
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDEN
Sbjct: 335 FQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEE 454
DAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 395 DAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 258 bits (659), Expect = 6e-69
Identities = 123/152 (80%), Positives = 143/152 (94%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
+KLFELLD L+FNQV++FVKSVQRC+AL LL EQNFPAI IHR MTQE+R++RYQ FK+
Sbjct: 273 KKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKD 332
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQKR+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 333 FQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEER 457
DAKILN+VQ+RF+VNISELP+ ++++TY+E R
Sbjct: 393 DAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 243 bits (621), Expect = 2e-64
Identities = 115/152 (75%), Positives = 140/152 (92%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
R+L LLD L+FNQV++FVK+V+RC AL LL EQNFP+IAIHRQM QE+R+SRYQAFK+
Sbjct: 272 RRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKD 331
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
FQKR+LVAT+LFGRGMDIERVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLAITF+SDEN
Sbjct: 332 FQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDEN 391
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYMEER 457
DAK LN VQ+RF+++I+ELP+ ++++TY+E R
Sbjct: 392 DAKTLNSVQDRFDISITELPEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 199 bits (506), Expect = 3e-51
Identities = 96/149 (64%), Positives = 121/149 (81%)
Frame = +2
Query: 2 RKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKN 181
RK+ +LLD L+FNQV++FVKSV R L LL E NFP+I IH + QE+RI RY+AFK+
Sbjct: 284 RKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKD 343
Query: 182 FQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDEN 361
F KR+ VAT++FGRG+DIERVNIV NYDMP+ D+YLHRV RAGRFGTKGLAITF S E
Sbjct: 344 FDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEE 403
Query: 362 DAKILNDVQNRFEVNISELPDVVEITTYM 448
D++IL+ +Q RFEVNI+ELPD +++ +YM
Sbjct: 404 DSQILDKIQERFEVNITELPDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,862,467
Number of Sequences: 369166
Number of extensions: 1089194
Number of successful extensions: 2802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2770
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)