Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_I16
(716 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 331 1e-90
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 331 1e-90
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 331 1e-90
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 331 1e-90
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 331 1e-90
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 328 7e-90
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 328 1e-89
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 328 1e-89
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 310 2e-84
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 267 2e-71
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 331 bits (849), Expect = 1e-90
Identities = 155/192 (80%), Positives = 183/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FV
Sbjct: 235 IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 294
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 295 KSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 354
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISEL
Sbjct: 355 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 414
Query: 545 PDVVEITTYMEE 580
PD ++I++Y+E+
Sbjct: 415 PDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 331 bits (849), Expect = 1e-90
Identities = 155/192 (80%), Positives = 183/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FV
Sbjct: 235 IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 294
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 295 KSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 354
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISEL
Sbjct: 355 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 414
Query: 545 PDVVEITTYMEE 580
PD ++I++Y+E+
Sbjct: 415 PDEIDISSYIEQ 426
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 331 bits (849), Expect = 1e-90
Identities = 155/192 (80%), Positives = 183/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FV
Sbjct: 235 IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 294
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 295 KSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 354
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISEL
Sbjct: 355 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 414
Query: 545 PDVVEITTYMEE 580
PD ++I++Y+E+
Sbjct: 415 PDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 331 bits (849), Expect = 1e-90
Identities = 155/192 (80%), Positives = 183/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FV
Sbjct: 235 IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 294
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 295 KSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 354
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISEL
Sbjct: 355 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 414
Query: 545 PDVVEITTYMEE 580
PD ++I++Y+E+
Sbjct: 415 PDEIDISSYIEQ 426
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 331 bits (848), Expect = 1e-90
Identities = 153/193 (79%), Positives = 183/193 (94%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+CKKFMQDP+E+++DD++KLTLHGL+QHY+ +KENEKN+KLFELLD L+FNQV++FV
Sbjct: 232 IRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFV 291
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRC+AL LL EQNFPAI IHR MTQE+R++RYQ FK+FQKR+LVATNLFGRGMDIE
Sbjct: 292 KSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIE 351
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILN+VQ+RF+VNISEL
Sbjct: 352 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISEL 411
Query: 545 PDVVEITTYMEER 583
P+ ++++TY+E R
Sbjct: 412 PEEIDLSTYIEGR 424
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 328 bits (842), Expect = 7e-90
Identities = 152/192 (79%), Positives = 184/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQVI+FV
Sbjct: 234 IRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFV 293
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 294 KSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 353
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVN++EL
Sbjct: 354 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAEL 413
Query: 545 PDVVEITTYMEE 580
P+ ++I+TY+E+
Sbjct: 414 PEEIDISTYIEQ 425
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 328 bits (840), Expect = 1e-89
Identities = 150/192 (78%), Positives = 184/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV++FV
Sbjct: 234 IRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFV 293
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 294 KSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 353
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN++EL
Sbjct: 354 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAEL 413
Query: 545 PDVVEITTYMEE 580
P+ ++I+TY+E+
Sbjct: 414 PEEIDISTYIEQ 425
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 328 bits (840), Expect = 1e-89
Identities = 150/192 (78%), Positives = 184/192 (95%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV++FV
Sbjct: 234 IRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFV 293
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIE
Sbjct: 294 KSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 353
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN++EL
Sbjct: 354 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAEL 413
Query: 545 PDVVEITTYMEE 580
P+ ++I+TY+E+
Sbjct: 414 PEEIDISTYIEQ 425
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 310 bits (794), Expect = 2e-84
Identities = 142/193 (73%), Positives = 179/193 (92%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
+R +CK+FMQDP+E+++DD++KLTLHGL+QHY+K+KE EKNR+L LLD L+FNQV++FV
Sbjct: 231 LRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFV 290
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
K+V+RC AL LL EQNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVAT+LFGRGMDIE
Sbjct: 291 KAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIE 350
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLAITF+SDENDAK LN VQ+RF+++I+EL
Sbjct: 351 RVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITEL 410
Query: 545 PDVVEITTYMEER 583
P+ ++++TY+E R
Sbjct: 411 PEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 267 bits (683), Expect = 2e-71
Identities = 126/190 (66%), Positives = 160/190 (84%)
Frame = +2
Query: 5 IRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFV 184
IRPICKKFMQ+PLEI++DD++KLTLHGL+QHY+K++E KNRK+ +LLD L+FNQV++FV
Sbjct: 243 IRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFV 302
Query: 185 KSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIE 364
KSV R L LL E NFP+I IH + QE+RI RY+AFK+F KR+ VAT++FGRG+DIE
Sbjct: 303 KSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIE 362
Query: 365 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISEL 544
RVNIV NYDMP+ D+YLHRV RAGRFGTKGLAITF S E D++IL+ +Q RFEVNI+EL
Sbjct: 363 RVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITEL 422
Query: 545 PDVVEITTYM 574
PD +++ +YM
Sbjct: 423 PDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,621,894
Number of Sequences: 369166
Number of extensions: 1494088
Number of successful extensions: 4002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3927
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)