Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M09
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 457 e-128
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 457 e-128
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 457 e-128
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 456 e-128
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 455 e-128
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 449 e-126
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 449 e-126
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 447 e-125
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 403 e-112
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 392 e-109
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 457 bits (1177), Expect = e-128
Identities = 220/288 (76%), Positives = 255/288 (88%)
Frame = +2
Query: 5 ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
E K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 185 QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
QAKSGMGKTAVFVLATLQQL+ G VLV+CHTRELAFQISKEYERFSKYM N+ V+
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 365 VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ +
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 545 MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 725 LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPA
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 314
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 457 bits (1177), Expect = e-128
Identities = 220/288 (76%), Positives = 255/288 (88%)
Frame = +2
Query: 5 ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
E K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 185 QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
QAKSGMGKTAVFVLATLQQL+ G VLV+CHTRELAFQISKEYERFSKYM N+ V+
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 365 VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ +
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 545 MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 725 LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPA
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 314
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 457 bits (1177), Expect = e-128
Identities = 220/288 (76%), Positives = 255/288 (88%)
Frame = +2
Query: 5 ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
E K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 185 QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
QAKSGMGKTAVFVLATLQQL+ G VLV+CHTRELAFQISKEYERFSKYM N+ V+
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 365 VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ +
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 545 MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 725 LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPA
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 314
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 456 bits (1173), Expect = e-128
Identities = 212/283 (74%), Positives = 252/283 (89%)
Frame = +2
Query: 20 KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
K VKG+YVS+HSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+L MD+LCQAKSG
Sbjct: 29 KDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 88
Query: 200 MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
MGKTAVFVLATLQQL+ +D+ TC VLV+CHTRELAFQISKEYERFSKYM + V+VF+GG
Sbjct: 89 MGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGG 148
Query: 380 VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
+ I+ D E LK P ++V TPGR+L L+R K LNLK +KHF+LDECDKML+ + MR DV
Sbjct: 149 MAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDV 208
Query: 560 QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
QE+F+ TPH KQVMMFSATLSK+IRP+CKKFMQDP+E+++DD++KLTLHGL+QHY+ +KE
Sbjct: 209 QEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKE 268
Query: 740 NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
NEKN+KLFELLD L+FNQV++FVKSVQRC+AL LL EQNFPA
Sbjct: 269 NEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPA 311
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 455 bits (1170), Expect = e-128
Identities = 218/288 (75%), Positives = 255/288 (88%)
Frame = +2
Query: 5 ETQTTKGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLC 184
E K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLC
Sbjct: 28 EAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 185 QAKSGMGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVS 364
QAKSGMGKTAVFVLATLQQL+ G VLV+CHTRELAFQISKEYERFSKYM ++ V+
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146
Query: 365 VFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVS 544
VF+GG+ ++ D E LKK+ P ++V TPGR+L L R K+LNLK +KHFILDECDKML+ +
Sbjct: 147 VFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 545 MRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHY 724
MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 725 LKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPA
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA 314
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 449 bits (1156), Expect = e-126
Identities = 213/283 (75%), Positives = 256/283 (90%)
Frame = +2
Query: 20 KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLCQAKSG
Sbjct: 32 KDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 91
Query: 200 MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
MGKTAVFVLATLQQ++ + G VLV+CHTRELAFQISKEYERFSKYM ++ VSVF+GG
Sbjct: 92 MGKTAVFVLATLQQIEPVN-GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 380 VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
+ I+ D + LKK+ P ++V TPGR+L LVR ++LNL++VKHF+LDECDKML+ + MR DV
Sbjct: 151 LSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV 210
Query: 560 QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
QE+F+LTPH+KQ MMFSATLSKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K+
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
Query: 740 NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+EKNRKLF+LLD L+FNQV++FVKSVQRC+AL LL EQNFPA
Sbjct: 271 SEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPA 313
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 449 bits (1155), Expect = e-126
Identities = 213/283 (75%), Positives = 256/283 (90%)
Frame = +2
Query: 20 KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
K VKGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLCQAKSG
Sbjct: 32 KDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 91
Query: 200 MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
MGKTAVFVLATLQQ++ + G VLV+CHTRELAFQISKEYERFSKYM ++ VSVF+GG
Sbjct: 92 MGKTAVFVLATLQQIEPIN-GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 380 VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
+ I+ D + LKK+ P ++V TPGR+L LVR ++LNL++VKHF+LDECDKML+ + MR DV
Sbjct: 151 LSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV 210
Query: 560 QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
QE+F+LTPH+KQ MMFSATLSKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K+
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
Query: 740 NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+EKNRKLF+LLD L+FNQV++FVKSVQRC+AL LL EQNFPA
Sbjct: 271 SEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPA 313
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 447 bits (1149), Expect = e-125
Identities = 212/283 (74%), Positives = 255/283 (90%)
Frame = +2
Query: 20 KGVKGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSG 199
K +KGSYVS+HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL MDVLCQAKSG
Sbjct: 32 KDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSG 91
Query: 200 MGKTAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGG 379
MGKTAVFVLATLQQ++ + G VLV+CHTRELAFQISKEYERFSKYM ++ VSVF+GG
Sbjct: 92 MGKTAVFVLATLQQIEPVN-GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 380 VPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDV 559
+ I+ D E LKK+ P ++V TPGR+L LVR ++ +LK+VKHF+LDECDKML+ + MR DV
Sbjct: 151 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV 210
Query: 560 QEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKE 739
QE+F+LTPH+KQ MMFSATLSK+IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K+
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
Query: 740 NEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
+EKNRKLF+LLD L+FNQVI+FVKSVQRC+AL LL EQNFPA
Sbjct: 271 SEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPA 313
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 403 bits (1035), Expect = e-112
Identities = 190/280 (67%), Positives = 233/280 (83%)
Frame = +2
Query: 29 KGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGK 208
KG+Y S+HSSGFRDFLLKPE+LRAI DCGFEHPSEVQHECIPQAIL MDV+CQAKSGMGK
Sbjct: 32 KGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGK 91
Query: 209 TAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGGVPI 388
TAVFV+ TLQQL+ D G V+ +CHTRELAFQISKEYERFSKY+ + V+VF+GG+ I
Sbjct: 92 TAVFVITTLQQLEPVD-GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAI 150
Query: 389 RNDIEKLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEV 568
+ D E+L P ++V TPGR+L L R L L VK+F+LDECDKM+ + MR DVQE+
Sbjct: 151 KKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEI 210
Query: 569 FKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEK 748
K+TP QKQVMMFSATL KE+R +CK+FMQDP+E+++DD++KLTLHGL+QHY+K+KE EK
Sbjct: 211 VKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEK 270
Query: 749 NRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
NR+L LLD L+FNQV++FVK+V+RC AL LL EQNFP+
Sbjct: 271 NRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPS 310
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 392 bits (1006), Expect = e-109
Identities = 194/282 (68%), Positives = 232/282 (82%), Gaps = 2/282 (0%)
Frame = +2
Query: 29 KGSYVSMHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGK 208
KGSYV +HS+GFRDFLLKPELLRAI D GFEHPSEVQ CIPQ+IL DVLCQAKSGMGK
Sbjct: 42 KGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGK 101
Query: 209 TAVFVLATLQQLDATDDGTCKVLVLCHTRELAFQISKEYERFSKYMSNINVSVFYGGVPI 388
TAVFVL+TLQQ++ D G VLVLCHTRELAFQI EY RFSKY+ ++ +VFYGG+ I
Sbjct: 102 TAVFVLSTLQQIEPVD-GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINI 160
Query: 389 RNDIE--KLKKSVPQLIVATPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQ 562
+ D+E K K P ++VATPGRL LVR+K L + SVKHF+LDECDK+L++V MR D+Q
Sbjct: 161 KQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQ 220
Query: 563 EVFKLTPHQKQVMMFSATLSKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKEN 742
EVF+ TP QKQVMMFSATLS EIRPICKKFMQ+PLEI++DD++KLTLHGL+QHY+K++E
Sbjct: 221 EVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEK 280
Query: 743 EKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPA 868
KNRK+ +LLD L+FNQV++FVKSV R L LL E NFP+
Sbjct: 281 AKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPS 322
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,134,348
Number of Sequences: 369166
Number of extensions: 1983244
Number of successful extensions: 5950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5462
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)