Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O05
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 430 e-120
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 430 e-120
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 430 e-120
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 430 e-120
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 426 e-119
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 426 e-119
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 424 e-118
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 423 e-118
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 392 e-109
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 357 2e-98
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 430 bits (1106), Expect = e-120
Identities = 202/255 (79%), Positives = 239/255 (93%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L L R K+LNLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATL
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV+
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 291
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 292 IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 351
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNI
Sbjct: 352 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 411
Query: 723 SELPDVVEITTYMEE 767
SELPD ++I++Y+E+
Sbjct: 412 SELPDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 430 bits (1106), Expect = e-120
Identities = 202/255 (79%), Positives = 239/255 (93%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L L R K+LNLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATL
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV+
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 291
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 292 IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 351
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNI
Sbjct: 352 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 411
Query: 723 SELPDVVEITTYMEE 767
SELPD ++I++Y+E+
Sbjct: 412 SELPDEIDISSYIEQ 426
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 430 bits (1106), Expect = e-120
Identities = 202/255 (79%), Positives = 239/255 (93%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L L R K+LNLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATL
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV+
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 291
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 292 IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 351
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNI
Sbjct: 352 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 411
Query: 723 SELPDVVEITTYMEE 767
SELPD ++I++Y+E+
Sbjct: 412 SELPDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 430 bits (1106), Expect = e-120
Identities = 202/255 (79%), Positives = 239/255 (93%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L L R K+LNLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATL
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SKEIRP+C+KFMQDP+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV+
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVV 291
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 292 IFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 351
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNI
Sbjct: 352 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 411
Query: 723 SELPDVVEITTYMEE 767
SELPD ++I++Y+E+
Sbjct: 412 SELPDEIDISSYIEQ 426
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 426 bits (1094), Expect = e-119
Identities = 196/255 (76%), Positives = 241/255 (94%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L LVR ++LNL++VKHF+LDECDKML+ + MR DVQE+F+LTPH+KQ MMFSATL
Sbjct: 171 TPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 230
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV+
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVV 290
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN+
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNV 410
Query: 723 SELPDVVEITTYMEE 767
+ELP+ ++I+TY+E+
Sbjct: 411 AELPEEIDISTYIEQ 425
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 426 bits (1094), Expect = e-119
Identities = 196/255 (76%), Positives = 241/255 (94%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L LVR ++LNL++VKHF+LDECDKML+ + MR DVQE+F+LTPH+KQ MMFSATL
Sbjct: 171 TPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 230
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SKEIRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV+
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVV 290
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN+
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNV 410
Query: 723 SELPDVVEITTYMEE 767
+ELP+ ++I+TY+E+
Sbjct: 411 AELPEEIDISTYIEQ 425
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 424 bits (1091), Expect = e-118
Identities = 198/256 (77%), Positives = 237/256 (92%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L L+R K LNLK +KHF+LDECDKML+ + MR DVQE+F+ TPH KQVMMFSATL
Sbjct: 169 TPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATL 228
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SK+IRP+CKKFMQDP+E+++DD++KLTLHGL+QHY+ +KENEKN+KLFELLD L+FNQV+
Sbjct: 229 SKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVV 288
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRC+AL LL EQNFPAI IHR MTQE+R++RYQ FK+FQKR+LVATNLFGRGM
Sbjct: 289 IFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGM 348
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILN+VQ+RF+VNI
Sbjct: 349 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNI 408
Query: 723 SELPDVVEITTYMEER 770
SELP+ ++++TY+E R
Sbjct: 409 SELPEEIDLSTYIEGR 424
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 423 bits (1087), Expect = e-118
Identities = 196/255 (76%), Positives = 240/255 (94%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L LVR ++ +LK+VKHF+LDECDKML+ + MR DVQE+F+LTPH+KQ MMFSATL
Sbjct: 171 TPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 230
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
SK+IRP+C+KFMQDP+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQVI
Sbjct: 231 SKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVI 290
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGM
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVN+
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNV 410
Query: 723 SELPDVVEITTYMEE 767
+ELP+ ++I+TY+E+
Sbjct: 411 AELPEEIDISTYIEQ 425
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 392 bits (1006), Expect = e-109
Identities = 183/256 (71%), Positives = 227/256 (88%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGR+L L R L L VK+F+LDECDKM+ + MR DVQE+ K+TP QKQVMMFSATL
Sbjct: 168 TPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATL 227
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
KE+R +CK+FMQDP+E+++DD++KLTLHGL+QHY+K+KE EKNR+L LLD L+FNQV+
Sbjct: 228 PKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVV 287
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVK+V+RC AL LL EQNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVAT+LFGRGM
Sbjct: 288 IFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGM 347
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLAITF+SDENDAK LN VQ+RF+++I
Sbjct: 348 DIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISI 407
Query: 723 SELPDVVEITTYMEER 770
+ELP+ ++++TY+E R
Sbjct: 408 TELPEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 357 bits (916), Expect = 2e-98
Identities = 171/253 (67%), Positives = 213/253 (84%)
Frame = +3
Query: 3 TPGRLLDLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATL 182
TPGRL LVR+K L + SVKHF+LDECDK+L++V MR D+QEVF+ TP QKQVMMFSATL
Sbjct: 180 TPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATL 239
Query: 183 SKEIRPICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVI 362
S EIRPICKKFMQ+PLEI++DD++KLTLHGL+QHY+K++E KNRK+ +LLD L+FNQV+
Sbjct: 240 SNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVV 299
Query: 363 VFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGM 542
+FVKSV R L LL E NFP+I IH + QE+RI RY+AFK+F KR+ VAT++FGRG+
Sbjct: 300 IFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGI 359
Query: 543 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNI 722
DIERVNIV NYDMP+ D+YLHRV RAGRFGTKGLAITF S E D++IL+ +Q RFEVNI
Sbjct: 360 DIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNI 419
Query: 723 SELPDVVEITTYM 761
+ELPD +++ +YM
Sbjct: 420 TELPDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,827,155
Number of Sequences: 369166
Number of extensions: 1816144
Number of successful extensions: 5161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4803
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)