Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_H18
(556 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 271 6e-73
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 271 6e-73
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 271 6e-73
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 271 6e-73
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 271 1e-72
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 269 3e-72
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 268 5e-72
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 268 5e-72
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 253 2e-67
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 206 3e-53
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 271 bits (694), Expect = 6e-73
Identities = 130/159 (81%), Positives = 150/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+
Sbjct: 268 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 327
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
ITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 388 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 271 bits (694), Expect = 6e-73
Identities = 130/159 (81%), Positives = 150/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+
Sbjct: 268 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 327
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
ITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 388 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 271 bits (694), Expect = 6e-73
Identities = 130/159 (81%), Positives = 150/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+
Sbjct: 268 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 327
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
ITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 388 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 271 bits (694), Expect = 6e-73
Identities = 130/159 (81%), Positives = 150/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL LL EQNFPAIAIHR M QE+R+
Sbjct: 268 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL 327
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 328 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 387
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
ITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 388 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 271 bits (692), Expect = 1e-72
Identities = 129/159 (81%), Positives = 150/159 (94%)
Frame = +3
Query: 12 VKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRIS 191
+KENEKN+KLFELLD L+FNQV++FVKSVQRC+AL LL EQNFPAI IHR MTQE+R++
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLN 325
Query: 192 RYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 371
RYQ FK+FQKR+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 372 TFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEER 488
TF+SDENDAKILN+VQ+RF+VNISELP+ ++++TY+E R
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 269 bits (688), Expect = 3e-72
Identities = 128/159 (80%), Positives = 151/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K++EKNRKLF+LLD L+FNQVI+FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+
Sbjct: 267 KLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERL 326
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
ITF+SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 387 ITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 268 bits (686), Expect = 5e-72
Identities = 126/159 (79%), Positives = 151/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K++EKNRKLF+LLD L+FNQV++FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+
Sbjct: 267 KLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERL 326
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
+TF+SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 387 VTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 268 bits (686), Expect = 5e-72
Identities = 126/159 (79%), Positives = 151/159 (94%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++K++EKNRKLF+LLD L+FNQV++FVKSVQRC+AL LL EQNFPAIAIHR M QE+R+
Sbjct: 267 KLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERL 326
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 485
+TF+SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 387 VTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 253 bits (647), Expect = 2e-67
Identities = 120/160 (75%), Positives = 147/160 (91%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
++KE EKNR+L LLD L+FNQV++FVK+V+RC AL LL EQNFP+IAIHRQM QE+R+
Sbjct: 264 KLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERL 323
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
SRYQAFK+FQKR+LVAT+LFGRGMDIERVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLA
Sbjct: 324 SRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLA 383
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEER 488
ITF+SDENDAK LN VQ+RF+++I+ELP+ ++++TY+E R
Sbjct: 384 ITFVSDENDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 206 bits (524), Expect = 3e-53
Identities = 99/157 (63%), Positives = 127/157 (80%)
Frame = +3
Query: 9 EVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCNLLCEQNFPAIAIHRQMTQEDRI 188
+++E KNRK+ +LLD L+FNQV++FVKSV R L LL E NFP+I IH + QE+RI
Sbjct: 276 KLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERI 335
Query: 189 SRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 368
RY+AFK+F KR+ VAT++FGRG+DIERVNIV NYDMP+ D+YLHRV RAGRFGTKGLA
Sbjct: 336 KRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLA 395
Query: 369 ITFISDENDAKILNDVQNRFEVNISELPDVVEITTYM 479
ITF S E D++IL+ +Q RFEVNI+ELPD +++ +YM
Sbjct: 396 ITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,126,240
Number of Sequences: 369166
Number of extensions: 1144809
Number of successful extensions: 3004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2969
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)