Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D07
(545 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 230 1e-60
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 230 1e-60
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 230 1e-60
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 230 1e-60
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 229 3e-60
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 229 3e-60
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 229 3e-60
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 229 4e-60
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 218 8e-57
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 173 2e-43
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 230 bits (587), Expect = 1e-60
Identities = 111/134 (82%), Positives = 125/134 (93%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 293 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 352
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNIS
Sbjct: 353 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 412
Query: 368 ELPDVVEITTYMEE 409
ELPD ++I++Y+E+
Sbjct: 413 ELPDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 230 bits (587), Expect = 1e-60
Identities = 111/134 (82%), Positives = 125/134 (93%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 293 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 352
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNIS
Sbjct: 353 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 412
Query: 368 ELPDVVEITTYMEE 409
ELPD ++I++Y+E+
Sbjct: 413 ELPDEIDISSYIEQ 426
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 230 bits (587), Expect = 1e-60
Identities = 111/134 (82%), Positives = 125/134 (93%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 293 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 352
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNIS
Sbjct: 353 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 412
Query: 368 ELPDVVEITTYMEE 409
ELPD ++I++Y+E+
Sbjct: 413 ELPDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 230 bits (587), Expect = 1e-60
Identities = 111/134 (82%), Positives = 125/134 (93%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRCIAL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 293 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 352
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNI FNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNIS
Sbjct: 353 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 412
Query: 368 ELPDVVEITTYMEE 409
ELPD ++I++Y+E+
Sbjct: 413 ELPDEIDISSYIEQ 426
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 229 bits (585), Expect = 3e-60
Identities = 109/134 (81%), Positives = 126/134 (94%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 292 FVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMD 351
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVN++
Sbjct: 352 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVA 411
Query: 368 ELPDVVEITTYMEE 409
ELP+ ++I+TY+E+
Sbjct: 412 ELPEEIDISTYIEQ 425
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 229 bits (584), Expect = 3e-60
Identities = 108/134 (80%), Positives = 126/134 (94%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 292 FVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMD 351
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN++
Sbjct: 352 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVA 411
Query: 368 ELPDVVEITTYMEE 409
ELP+ ++I+TY+E+
Sbjct: 412 ELPEEIDISTYIEQ 425
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 229 bits (584), Expect = 3e-60
Identities = 108/134 (80%), Positives = 126/134 (94%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRC+AL LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMD
Sbjct: 292 FVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMD 351
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN++
Sbjct: 352 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVA 411
Query: 368 ELPDVVEITTYMEE 409
ELP+ ++I+TY+E+
Sbjct: 412 ELPEEIDISTYIEQ 425
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 229 bits (583), Expect = 4e-60
Identities = 109/135 (80%), Positives = 126/135 (93%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SVQRC+AL LL EQNFPAI IHR MTQE+R++RYQ FK+FQKR+LVATNLFGRGMD
Sbjct: 290 FVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMD 349
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF+SDENDAKILN+VQ+RF+VNIS
Sbjct: 350 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNIS 409
Query: 368 ELPDVVEITTYMEER 412
ELP+ ++++TY+E R
Sbjct: 410 ELPEEIDLSTYIEGR 424
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 218 bits (555), Expect = 8e-57
Identities = 103/135 (76%), Positives = 125/135 (92%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F ++V+RC AL LL EQNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVAT+LFGRGMD
Sbjct: 289 FVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMD 348
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNIVFNYDMPEDSD+YLHRVARAGRFGTKGLAITF+SDENDAK LN VQ+RF+++I+
Sbjct: 349 IERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISIT 408
Query: 368 ELPDVVEITTYMEER 412
ELP+ ++++TY+E R
Sbjct: 409 ELPEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 173 bits (439), Expect = 2e-43
Identities = 84/132 (63%), Positives = 105/132 (79%)
Frame = +2
Query: 8 FCESVQRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMD 187
F +SV R L LL E NFP+I IH + QE+RI RY+AFK+F KR+ VAT++FGRG+D
Sbjct: 301 FVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGID 360
Query: 188 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNIS 367
IERVNIV NYDMP+ D+YLHRV RAGRFGTKGLAITF S E D++IL+ +Q RFEVNI+
Sbjct: 361 IERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNIT 420
Query: 368 ELPDVVEITTYM 403
ELPD +++ +YM
Sbjct: 421 ELPDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,964,297
Number of Sequences: 369166
Number of extensions: 1148484
Number of successful extensions: 2853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2824
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)