Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O16
(750 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 403 e-112
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 403 e-112
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 403 e-112
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 400 e-111
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 398 e-110
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 398 e-110
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 396 e-110
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 396 e-110
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 367 e-101
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 336 3e-92
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 403 bits (1035), Expect = e-112
Identities = 188/249 (75%), Positives = 225/249 (90%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM N+ V+VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+L
Sbjct: 126 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSL 185
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 186 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 366 EDSDTYLHR 374
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 403 bits (1035), Expect = e-112
Identities = 188/249 (75%), Positives = 225/249 (90%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM N+ V+VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+L
Sbjct: 126 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSL 185
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 186 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 366 EDSDTYLHR 374
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 403 bits (1035), Expect = e-112
Identities = 188/249 (75%), Positives = 225/249 (90%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM N+ V+VF+GG+ I+ D E LKK+ P ++V TPGR+L L R K+L
Sbjct: 126 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSL 185
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 186 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 366 EDSDTYLHR 374
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 400 bits (1029), Expect = e-111
Identities = 186/249 (74%), Positives = 225/249 (90%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM ++ V+VF+GG+ ++ D E LKK+ P ++V TPGR+L L R K+L
Sbjct: 126 AFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSL 185
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NLK +KHFILDECDKML+ + MR DVQE+F++TPH+KQVMMFSATLSKEIRP+C+KFMQD
Sbjct: 186 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+EIF+DD++KLTLHGL+Q+Y+K+K+NEKNRKLF+LLD L+FNQV++FVKSVQRCIAL
Sbjct: 246 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 305
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMP
Sbjct: 306 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 365
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 366 EDSDTYLHR 374
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 398 bits (1022), Expect = e-110
Identities = 184/249 (73%), Positives = 227/249 (91%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM ++ VSVF+GG+ I+ D + LKK+ P ++V TPGR+L LVR ++L
Sbjct: 125 AFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSL 184
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NL++VKHF+LDECDKML+ + MR DVQE+F+LTPH+KQ MMFSATLSKEIRP+C+KFMQD
Sbjct: 185 NLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQD 244
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV++FVKSVQRC+AL
Sbjct: 245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQ 304
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 305 LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 364
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 365 EDSDTYLHR 373
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 398 bits (1022), Expect = e-110
Identities = 184/249 (73%), Positives = 227/249 (91%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM ++ VSVF+GG+ I+ D + LKK+ P ++V TPGR+L LVR ++L
Sbjct: 125 AFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSL 184
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NL++VKHF+LDECDKML+ + MR DVQE+F+LTPH+KQ MMFSATLSKEIRP+C+KFMQD
Sbjct: 185 NLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQD 244
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQV++FVKSVQRC+AL
Sbjct: 245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQ 304
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 305 LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 364
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 365 EDSDTYLHR 373
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 396 bits (1017), Expect = e-110
Identities = 184/249 (73%), Positives = 226/249 (90%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM ++ VSVF+GG+ I+ D E LKK+ P ++V TPGR+L LVR ++
Sbjct: 125 AFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSF 184
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
+LK+VKHF+LDECDKML+ + MR DVQE+F+LTPH+KQ MMFSATLSK+IRP+C+KFMQD
Sbjct: 185 SLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 244
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+E+F+DD++KLTLHGL+Q+Y+K+K++EKNRKLF+LLD L+FNQVI+FVKSVQRC+AL
Sbjct: 245 PMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQ 304
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 305 LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 364
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 365 EDSDTYLHR 373
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 396 bits (1017), Expect = e-110
Identities = 184/249 (73%), Positives = 220/249 (88%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKYM + V+VF+GG+ I+ D E LK P ++V TPGR+L L+R K L
Sbjct: 123 AFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKL 182
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
NLK +KHF+LDECDKML+ + MR DVQE+F+ TPH KQVMMFSATLSK+IRP+CKKFMQD
Sbjct: 183 NLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQD 242
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+E+++DD++KLTLHGL+QHY+ +KENEKN+KLFELLD L+FNQV++FVKSVQRC+AL
Sbjct: 243 PMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQ 302
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFPAI IHR MTQE+R++RYQ FK+FQKR+LVATNLFGRGMDIERVNIVFNYDMP
Sbjct: 303 LLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMP 362
Query: 722 EDSDTYLHR 748
EDSDTYLHR
Sbjct: 363 EDSDTYLHR 371
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 367 bits (941), Expect = e-101
Identities = 171/249 (68%), Positives = 212/249 (85%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLLDLVRQKAL 181
AFQISKEYERFSKY+ + V+VF+GG+ I+ D E+L P ++V TPGR+L L R L
Sbjct: 122 AFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKL 181
Query: 182 NLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFMQD 361
L VK+F+LDECDKM+ + MR DVQE+ K+TP QKQVMMFSATL KE+R +CK+FMQD
Sbjct: 182 KLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQD 241
Query: 362 PLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIALCN 541
P+E+++DD++KLTLHGL+QHY+K+KE EKNR+L LLD L+FNQV++FVK+V+RC AL
Sbjct: 242 PMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQ 301
Query: 542 LLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMP 721
LL EQNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVAT+LFGRGMDIERVNIVFNYDMP
Sbjct: 302 LLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMP 361
Query: 722 EDSDTYLHR 748
EDSD+YLHR
Sbjct: 362 EDSDSYLHR 370
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 336 bits (862), Expect = 3e-92
Identities = 162/251 (64%), Positives = 204/251 (81%), Gaps = 2/251 (0%)
Frame = +2
Query: 2 AFQISKEYERFSKYMSNINVSVFYGGVPIRNDIE--KLKKSVPQLIVATPGRLLDLVRQK 175
AFQI EY RFSKY+ ++ +VFYGG+ I+ D+E K K P ++VATPGRL LVR+K
Sbjct: 132 AFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREK 191
Query: 176 ALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRPICKKFM 355
L + SVKHF+LDECDK+L++V MR D+QEVF+ TP QKQVMMFSATLS EIRPICKKFM
Sbjct: 192 ILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFM 251
Query: 356 QDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSVQRCIAL 535
Q+PLEI++DD++KLTLHGL+QHY+K++E KNRK+ +LLD L+FNQV++FVKSV R L
Sbjct: 252 QNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANEL 311
Query: 536 CNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYD 715
LL E NFP+I IH + QE+RI RY+AFK+F KR+ VAT++FGRG+DIERVNIV NYD
Sbjct: 312 DRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYD 371
Query: 716 MPEDSDTYLHR 748
MP+ D+YLHR
Sbjct: 372 MPDSPDSYLHR 382
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,334,028
Number of Sequences: 369166
Number of extensions: 1620901
Number of successful extensions: 4835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4446
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)