Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_H10
(422 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 209 2e-54
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 208 3e-54
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 208 3e-54
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 208 3e-54
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 208 3e-54
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 208 3e-54
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 208 3e-54
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 207 6e-54
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 202 2e-52
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 164 5e-41
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 209 bits (531), Expect = 2e-54
Identities = 98/117 (83%), Positives = 113/117 (96%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSD
Sbjct: 309 QNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSD 368
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 369 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 208 bits (530), Expect = 3e-54
Identities = 97/117 (82%), Positives = 113/117 (96%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSD
Sbjct: 309 QNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSD 368
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 369 TYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 208 bits (530), Expect = 3e-54
Identities = 99/117 (84%), Positives = 112/117 (95%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSD
Sbjct: 310 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 369
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 370 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 208 bits (530), Expect = 3e-54
Identities = 99/117 (84%), Positives = 112/117 (95%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSD
Sbjct: 310 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 369
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 370 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 208 bits (530), Expect = 3e-54
Identities = 97/117 (82%), Positives = 113/117 (96%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNIVFNYDMPEDSD
Sbjct: 309 QNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSD 368
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLA+TF+SDENDAKILNDVQ+RFEVN++ELP+ ++I+TY+E+
Sbjct: 369 TYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQ 425
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 208 bits (530), Expect = 3e-54
Identities = 99/117 (84%), Positives = 112/117 (95%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSD
Sbjct: 310 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 369
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 370 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 208 bits (530), Expect = 3e-54
Identities = 99/117 (84%), Positives = 112/117 (95%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAIAIHR M QE+R+SRYQ FK+FQ+R+LVATNLFGRGMDIERVNI FNYDMPEDSD
Sbjct: 310 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 369
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEE 351
TYLHRVARAGRFGTKGLAITF+SDENDAKILNDVQ+RFEVNISELPD ++I++Y+E+
Sbjct: 370 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQ 426
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 207 bits (528), Expect = 6e-54
Identities = 98/118 (83%), Positives = 113/118 (95%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFPAI IHR MTQE+R++RYQ FK+FQKR+LVATNLFGRGMDIERVNIVFNYDMPEDSD
Sbjct: 307 QNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSD 366
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEER 354
TYLHRVARAGRFGTKGLAITF+SDENDAKILN+VQ+RF+VNISELP+ ++++TY+E R
Sbjct: 367 TYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 202 bits (515), Expect = 2e-52
Identities = 94/118 (79%), Positives = 113/118 (95%)
Frame = +1
Query: 1 QNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSD 180
QNFP+IAIHRQM QE+R+SRYQAFK+FQKR+LVAT+LFGRGMDIERVNIVFNYDMPEDSD
Sbjct: 306 QNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSD 365
Query: 181 TYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYMEER 354
+YLHRVARAGRFGTKGLAITF+SDENDAK LN VQ+RF+++I+ELP+ ++++TY+E R
Sbjct: 366 SYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 423
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 164 bits (416), Expect = 5e-41
Identities = 76/114 (66%), Positives = 96/114 (84%)
Frame = +1
Query: 4 NFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDT 183
NFP+I IH + QE+RI RY+AFK+F KR+ VAT++FGRG+DIERVNIV NYDMP+ D+
Sbjct: 319 NFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDS 378
Query: 184 YLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDVVEITTYM 345
YLHRV RAGRFGTKGLAITF S E D++IL+ +Q RFEVNI+ELPD +++ +YM
Sbjct: 379 YLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,585,181
Number of Sequences: 369166
Number of extensions: 840378
Number of successful extensions: 2261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)