Planaria EST Database

DrC_01088

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01088
         (1005 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQD1|RAB5A_MOUSE  Ras-related protein Rab-5A                 262   1e-69
sp|P20339|RAB5A_HUMAN  Ras-related protein Rab-5A                 262   1e-69
sp|P18066|RAB5A_CANFA  Ras-related protein Rab-5A >gi|471170...   262   1e-69
sp|P51148|RAB5C_HUMAN  Ras-related protein Rab-5C (RAB5L) (L...   256   5e-68
sp|P51147|RAB5C_CANFA  Ras-related protein Rab-5C                 256   9e-68
sp|P35278|RAB5C_MOUSE  Ras-related protein Rab-5C                 256   9e-68
sp|P61021|RAB5B_MOUSE  Ras-related protein Rab-5B >gi|465776...   256   9e-68
sp|P29687|RAB5_TOBAC  Ras-related protein Rab5                    228   3e-59
sp|P31582|RHA1_ARATH  Ras-related protein RHA1                    226   6e-59
sp|P31583|RHN1_NICPL  Ras-related protein RHN1                    226   8e-59

>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
          Length = 215

 Score =  262 bits (669), Expect = 1e-69
 Identities = 130/180 (72%), Positives = 153/180 (85%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+  QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL  +A+   VIAL+GNK+
Sbjct: 76  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 573
           DL+ +R V   +  +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E   P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195

>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
          Length = 215

 Score =  262 bits (669), Expect = 1e-69
 Identities = 130/180 (72%), Positives = 153/180 (85%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+  QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL  +A+   VIAL+GNK+
Sbjct: 76  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 573
           DL+ +R V   +  +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E   P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195

>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
 sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
          Length = 215

 Score =  262 bits (669), Expect = 1e-69
 Identities = 130/180 (72%), Positives = 153/180 (85%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+  QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL  +A+   VIAL+GNK+
Sbjct: 76  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 573
           DL+ +R V   +  +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E   P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
          Length = 216

 Score =  256 bits (655), Expect = 5e-68
 Identities = 127/180 (70%), Positives = 150/180 (83%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+  QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL  +A+   VIALAGNK+
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 573
           DL+++R V   +   YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E        G+
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
          Length = 216

 Score =  256 bits (653), Expect = 9e-68
 Identities = 126/170 (74%), Positives = 148/170 (87%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+  QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL  +A+   VIALAGNK+
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 543
           DL+++R V   +   YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
          Length = 216

 Score =  256 bits (653), Expect = 9e-68
 Identities = 126/170 (74%), Positives = 148/170 (87%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+  QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL  +A+   VIALAGNK+
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 543
           DL+++R V   +   YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186

>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
 sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
          Length = 215

 Score =  256 bits (653), Expect = 9e-68
 Identities = 128/186 (68%), Positives = 152/186 (81%)
 Frame = +1

Query: 16  NTHTMQNRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTV 195
           N     ++  QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQ+V ++DTTV
Sbjct: 10  NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTV 69

Query: 196 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIA 375
           KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL  +A+   VIA
Sbjct: 70  KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIA 129

Query: 376 LAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTP 555
           LAGNK+DL+ +R V   +   YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E    
Sbjct: 130 LAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNL 189

Query: 556 NAGSGQ 573
              +G+
Sbjct: 190 GGAAGR 195

>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
          Length = 200

 Score =  228 bits (580), Expect = 3e-59
 Identities = 114/178 (64%), Positives = 139/178 (78%)
 Frame = +1

Query: 31  QNRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIW 210
           ++  +  KLVLLG+   GKSSLV+RFVKGQF E+QEST+GAAF + TV V + TVKFEIW
Sbjct: 5   RHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIW 64

Query: 211 DTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNK 390
           DTAGQERYHSLAPMYYRGA AAI+VYDITS ES  RAK W+QEL ++     V+ALAGNK
Sbjct: 65  DTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNK 124

Query: 391 SDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 564
           +DL  +R+V+  +   YA+ENGL FMETSAKT++NVN+IF EIAK+LPR +     AG
Sbjct: 125 ADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182

>sp|P31582|RHA1_ARATH Ras-related protein RHA1
          Length = 200

 Score =  226 bits (577), Expect = 6e-59
 Identities = 112/168 (66%), Positives = 133/168 (79%)
 Frame = +1

Query: 34  NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 213
           N+ +  KLVLLG+   GKSSLV+RFVK QF E+QEST+GAAF +QT+ V D TVKFEIWD
Sbjct: 6   NKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 65

Query: 214 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 393
           TAGQERYHSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL  +     V+ALAGNK+
Sbjct: 66  TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125

Query: 394 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 537
           DL   R+VS  +   YAQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 126 DLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173

>sp|P31583|RHN1_NICPL Ras-related protein RHN1
          Length = 200

 Score =  226 bits (576), Expect = 8e-59
 Identities = 113/171 (66%), Positives = 135/171 (78%)
 Frame = +1

Query: 52  KLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQER 231
           KLVLLG+   GKSSLV+RFVKGQF E+QEST+GAAF + T+ V + TVKFEIWDTAGQER
Sbjct: 12  KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71

Query: 232 YHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQR 411
           YHSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL ++     V+ALAGNK+DL  +R
Sbjct: 72  YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131

Query: 412 EVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 564
           +V+  +   YA+ENGL FMETSAKT+ NVN IF EIAK+LPR +     AG
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,882,716
Number of Sequences: 369166
Number of extensions: 2312152
Number of successful extensions: 7486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7085
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10670415085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01088

  1. Dr_sW_001_L22
  2. Dr_sW_005_K01
  3. Dr_sW_026_O17
  4. Dr_sW_002_N20
  5. Dr_sW_002_E12
  6. Dr_sW_018_A06
  7. Dr_sW_011_P23
  8. Dr_sW_027_H21
  9. Dr_sW_028_E17
  10. Dr_sW_015_M13