Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N20
(755 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 260 2e-69
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 260 2e-69
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 260 2e-69
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 255 8e-68
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 255 1e-67
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 254 2e-67
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 254 2e-67
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 227 2e-59
sp|P31583|RHN1_NICPL Ras-related protein RHN1 226 5e-59
sp|P31582|RHA1_ARATH Ras-related protein RHA1 224 2e-58
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 260 bits (665), Expect = 2e-69
Identities = 129/176 (73%), Positives = 151/176 (85%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWDTAGQ
Sbjct: 20 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 79
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+
Sbjct: 80 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 139
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 538
+R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 140 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 260 bits (665), Expect = 2e-69
Identities = 129/176 (73%), Positives = 151/176 (85%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWDTAGQ
Sbjct: 20 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 79
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+
Sbjct: 80 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 139
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 538
+R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 140 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 260 bits (665), Expect = 2e-69
Identities = 129/176 (73%), Positives = 151/176 (85%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWDTAGQ
Sbjct: 20 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 79
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+
Sbjct: 80 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 139
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 538
+R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 140 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 255 bits (652), Expect = 8e-68
Identities = 127/176 (72%), Positives = 149/176 (84%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQ+V ++DTTVKFEIWDTAGQ
Sbjct: 20 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 79
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL +A+ VIALAGNK+DL+
Sbjct: 80 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLAN 139
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 538
+R V + YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E +G+
Sbjct: 140 KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 255 bits (651), Expect = 1e-67
Identities = 126/176 (71%), Positives = 148/176 (84%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWDTAGQ
Sbjct: 21 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 80
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL++
Sbjct: 81 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 140
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 538
+R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E G+
Sbjct: 141 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 254 bits (649), Expect = 2e-67
Identities = 125/166 (75%), Positives = 146/166 (87%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWDTAGQ
Sbjct: 21 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 80
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL++
Sbjct: 81 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 140
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 508
+R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 141 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 254 bits (649), Expect = 2e-67
Identities = 125/166 (75%), Positives = 146/166 (87%)
Frame = +2
Query: 11 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 190
QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWDTAGQ
Sbjct: 21 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 80
Query: 191 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 370
ERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL++
Sbjct: 81 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 140
Query: 371 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 508
+R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 141 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 227 bits (579), Expect = 2e-59
Identities = 114/171 (66%), Positives = 136/171 (79%)
Frame = +2
Query: 17 KLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQER 196
KLVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + TV V + TVKFEIWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQER 71
Query: 197 YHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQR 376
YHSLAPMYYRGA AAI+VYDITS ES RAK W+QEL ++ V+ALAGNK+DL +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKR 131
Query: 377 EVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 529
+V+ + YA+ENGL FMETSAKT++NVN+IF EIAK+LPR + AG
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 226 bits (576), Expect = 5e-59
Identities = 113/171 (66%), Positives = 135/171 (78%)
Frame = +2
Query: 17 KLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQER 196
KLVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + T+ V + TVKFEIWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 197 YHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQR 376
YHSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL ++ V+ALAGNK+DL +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 377 EVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 529
+V+ + YA+ENGL FMETSAKT+ NVN IF EIAK+LPR + AG
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 224 bits (571), Expect = 2e-58
Identities = 111/167 (66%), Positives = 132/167 (79%)
Frame = +2
Query: 2 RQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDT 181
+ + KLVLLG+ GKSSLV+RFVK QF E+QEST+GAAF +QT+ V D TVKFEIWDT
Sbjct: 7 KNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDT 66
Query: 182 AGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSD 361
AGQERYHSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL + V+ALAGNK+D
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKAD 126
Query: 362 LSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 502
L R+VS + YAQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 127 LLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,077,685
Number of Sequences: 369166
Number of extensions: 1717643
Number of successful extensions: 6080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5682
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)