Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M13
(450 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8ZAG3|Y2D9_YERPE Hypothetical UPF0261 protein YPO3839/y... 32 0.85
sp|P33418|LOS1_YEAST Protein LOS1 31 1.1
sp|Q73XZ9|Y2159_MYCPA Hypothetical UPF0054 protein MAP2159c 30 3.2
sp|Q10128|YSO2_CAEEL Hypothetical protein F56D1.2 in chromo... 29 5.5
sp|P67134|YN67_MYCTU Hypothetical UPF0054 protein Rv2367c/M... 28 7.2
sp|Q5YZW3|Y1433_NOCFA Hypothetical UPF0054 protein nfa14330 28 7.2
sp|Q9GV77|FREM2_LYTVA Extracellular matrix protein 3 precur... 28 7.2
>sp|Q8ZAG3|Y2D9_YERPE Hypothetical UPF0261 protein YPO3839/y0391/YP3209
Length = 405
Score = 31.6 bits (70), Expect = 0.85
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 206 FLNNIEYRLNANDCLNTLQNIQNTQLYDWFTEE-TRTNSSIGYLQPHGPLDELDPAGRPD 30
+ + + Y+ NA L +N ++ W E+ R + +L P G LD G+P
Sbjct: 292 YADRLFYKHNAQVTLMRTTEQENIEMARWIGEKLNRCQGEVRFLIPEGGFSALDAPGQPF 351
Query: 29 WPSR 18
W +
Sbjct: 352 WDEK 355
>sp|P33418|LOS1_YEAST Protein LOS1
Length = 1100
Score = 31.2 bits (69), Expect = 1.1
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -2
Query: 290 NATVTVSEKHFQALIKKQ*NTVINNHTLFLNNIEYRLNAN--DCLNTLQNIQNTQLYDWF 117
N TV K+FQ +I V+ + +LFLNNI ++AN +C N I +Y F
Sbjct: 444 NETVRFKLKNFQEII------VVIDPSLFLNNISQEISANLMNCKNESWQIFELTIYQIF 497
Query: 116 --TEETRTN 96
+E T+ N
Sbjct: 498 NLSECTKNN 506
>sp|Q73XZ9|Y2159_MYCPA Hypothetical UPF0054 protein MAP2159c
Length = 177
Score = 29.6 bits (65), Expect = 3.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 65 PLDELDPAGRPDWPSR*PDPA 3
P+DEL+P GRPD P P PA
Sbjct: 67 PMDELEPGGRPDAPE--PGPA 85
>sp|Q10128|YSO2_CAEEL Hypothetical protein F56D1.2 in chromosome II precursor
Length = 718
Score = 28.9 bits (63), Expect = 5.5
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -2
Query: 326 YFPNVTVYLRIQNATVTVSEKHFQALIKKQ*NTVINNHTLFLNNIEYRLNANDCLNTLQN 147
Y P+V L I N + + F L T FL+N+E+ AN QN
Sbjct: 537 YSPHVPPNLAILNLPTFILPEQFAQL------------TAFLHNVEHTERAN----VTQN 580
Query: 146 IQNTQLYDW 120
I Q+++W
Sbjct: 581 ISEAQIHEW 589
>sp|P67134|YN67_MYCTU Hypothetical UPF0054 protein Rv2367c/MT2436
sp|P67135|YN88_MYCBO Hypothetical UPF0054 protein Mb2388c
Length = 177
Score = 28.5 bits (62), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 65 PLDELDPAGRPDWPSR*P 12
P+DEL+P GRPD P P
Sbjct: 67 PMDELEPGGRPDAPEPGP 84
>sp|Q5YZW3|Y1433_NOCFA Hypothetical UPF0054 protein nfa14330
Length = 184
Score = 28.5 bits (62), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 65 PLDELDPAGRPDWPSR*P 12
P+DEL+P GRPD P P
Sbjct: 67 PMDELEPGGRPDSPEPGP 84
>sp|Q9GV77|FREM2_LYTVA Extracellular matrix protein 3 precursor (FREM2 homolog)
Length = 3103
Score = 28.5 bits (62), Expect = 7.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 281 VTVSEKHFQALIKKQ*NTVINNHTLFLNNIEYRLNANDCLNTLQNIQNTQLYDWFTEETR 102
+TV+ H ++ ++N L L+ YR+ + C N L + + + TEET+
Sbjct: 2500 LTVTMPHVDGMLPVISTRQLSNFELALSKDGYRVGTHRCSNLLDYNEIPTDFGFITEETK 2559
Query: 101 TNSSIG 84
+ +G
Sbjct: 2560 NPNVVG 2565
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,577,646
Number of Sequences: 369166
Number of extensions: 871419
Number of successful extensions: 2314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)