Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K01
(699 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 238 1e-62
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 238 1e-62
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 238 1e-62
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 233 4e-61
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 233 5e-61
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 232 8e-61
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 232 8e-61
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 214 2e-55
sp|P31583|RHN1_NICPL Ras-related protein RHN1 213 3e-55
sp|P31582|RHA1_ARATH Ras-related protein RHA1 211 2e-54
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 238 bits (607), Expect = 1e-62
Identities = 117/165 (70%), Positives = 139/165 (84%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHE+QEST+GAAFLTQT ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 31 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+ +R V + +
Sbjct: 91 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 150
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 495
YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 151 YADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 238 bits (607), Expect = 1e-62
Identities = 117/165 (70%), Positives = 139/165 (84%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHE+QEST+GAAFLTQT ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 31 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+ +R V + +
Sbjct: 91 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 150
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 495
YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 151 YADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 238 bits (607), Expect = 1e-62
Identities = 117/165 (70%), Positives = 139/165 (84%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHE+QEST+GAAFLTQT ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 31 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+ +R V + +
Sbjct: 91 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 150
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 495
YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 151 YADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 233 bits (594), Expect = 4e-61
Identities = 115/165 (69%), Positives = 137/165 (83%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHEYQEST+GAAFLTQ+ ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 31 VGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYY 90
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT+QE+F RAKTW++EL +A+ VIALAGNK+DL+ +R V +
Sbjct: 91 RGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQA 150
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 495
YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E +G+
Sbjct: 151 YADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 233 bits (593), Expect = 5e-61
Identities = 114/165 (69%), Positives = 136/165 (82%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHEYQEST+GAAFLTQT ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 32 VGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 91
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL+++R V +
Sbjct: 92 RGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQA 151
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 495
YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E G+
Sbjct: 152 YADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 232 bits (591), Expect = 8e-61
Identities = 113/155 (72%), Positives = 134/155 (86%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHEYQEST+GAAFLTQT ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 32 VGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 91
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL+++R V +
Sbjct: 92 RGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQA 151
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 465
YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 152 YADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 232 bits (591), Expect = 8e-61
Identities = 113/155 (72%), Positives = 134/155 (86%)
Frame = +1
Query: 1 VGKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYY 180
VGKSSLV+RFVKGQFHEYQEST+GAAFLTQT ++DTTVKFEIWDTAGQERYHSLAPMYY
Sbjct: 32 VGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 91
Query: 181 RGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGST 360
RGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL+++R V +
Sbjct: 92 RGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQA 151
Query: 361 YAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 465
YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 152 YADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 214 bits (544), Expect = 2e-55
Identities = 107/161 (66%), Positives = 128/161 (79%)
Frame = +1
Query: 4 GKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYYR 183
GKSSLV+RFVKGQF E+QEST+GAAF + T V + TVKFEIWDTAGQERYHSLAPMYYR
Sbjct: 22 GKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYR 81
Query: 184 GAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGSTY 363
GA AAI+VYDITS ES RAK W+QEL ++ V+ALAGNK+DL +R+V+ + Y
Sbjct: 82 GAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLY 141
Query: 364 AQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 486
A+ENGL FMETSAKT++NVN+IF EIAK+LPR + AG
Sbjct: 142 AEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 213 bits (543), Expect = 3e-55
Identities = 107/161 (66%), Positives = 127/161 (78%)
Frame = +1
Query: 4 GKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYYR 183
GKSSLV+RFVKGQF E+QEST+GAAF + T V + TVKFEIWDTAGQERYHSLAPMYYR
Sbjct: 22 GKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYR 81
Query: 184 GAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGSTY 363
GA AAI+VYDITS +SF RAK W+QEL ++ V+ALAGNK+DL +R+V+ + Y
Sbjct: 82 GAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLY 141
Query: 364 AQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 486
A+ENGL FMETSAKT+ NVN IF EIAK+LPR + AG
Sbjct: 142 AEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 211 bits (536), Expect = 2e-54
Identities = 105/152 (69%), Positives = 122/152 (80%)
Frame = +1
Query: 4 GKSSLVMRFVKGQFHEYQESTVGAAFLTQTGVVEDTTVKFEIWDTAGQERYHSLAPMYYR 183
GKSSLV+RFVK QF E+QEST+GAAF +QT V D TVKFEIWDTAGQERYHSLAPMYYR
Sbjct: 22 GKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR 81
Query: 184 GAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQREVSISDGSTY 363
GA AAI+V+DIT+Q SF RAK W+QEL + V+ALAGNK+DL R+VS + Y
Sbjct: 82 GAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIY 141
Query: 364 AQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 459
AQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 142 AQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,844,170
Number of Sequences: 369166
Number of extensions: 1591783
Number of successful extensions: 5182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4900
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)