Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E17
(802 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 254 2e-67
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 254 2e-67
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 254 2e-67
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 249 6e-66
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 249 8e-66
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 248 1e-65
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 248 1e-65
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 225 1e-58
sp|P31583|RHN1_NICPL Ras-related protein RHN1 224 2e-58
sp|P31582|RHA1_ARATH Ras-related protein RHA1 221 2e-57
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 254 bits (649), Expect = 2e-67
Identities = 126/173 (72%), Positives = 148/173 (85%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWDTAGQERY
Sbjct: 23 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 82
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+ +R
Sbjct: 83 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 142
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 521
V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 143 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 254 bits (649), Expect = 2e-67
Identities = 126/173 (72%), Positives = 148/173 (85%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWDTAGQERY
Sbjct: 23 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 82
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+ +R
Sbjct: 83 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 142
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 521
V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 143 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 254 bits (649), Expect = 2e-67
Identities = 126/173 (72%), Positives = 148/173 (85%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWDTAGQERY
Sbjct: 23 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 82
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+DL+ +R
Sbjct: 83 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 142
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 521
V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 143 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 249 bits (636), Expect = 6e-66
Identities = 124/173 (71%), Positives = 146/173 (84%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQ+V ++DTTVKFEIWDTAGQERY
Sbjct: 23 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERY 82
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL +A+ VIALAGNK+DL+ +R
Sbjct: 83 HSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRM 142
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 521
V + YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E +G+
Sbjct: 143 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 249 bits (635), Expect = 8e-66
Identities = 123/173 (71%), Positives = 145/173 (83%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWDTAGQERY
Sbjct: 24 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 83
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL+++R
Sbjct: 84 HSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRA 143
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 521
V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E G+
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 248 bits (633), Expect = 1e-65
Identities = 122/163 (74%), Positives = 143/163 (87%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWDTAGQERY
Sbjct: 24 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 83
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL+++R
Sbjct: 84 HSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRA 143
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 491
V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 248 bits (633), Expect = 1e-65
Identities = 122/163 (74%), Positives = 143/163 (87%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWDTAGQERY
Sbjct: 24 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 83
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+DL+++R
Sbjct: 84 HSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRA 143
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 491
V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 144 VEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 225 bits (574), Expect = 1e-58
Identities = 113/170 (66%), Positives = 135/170 (79%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + TV V + TVKFEIWDTAGQERY
Sbjct: 13 LVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERY 72
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGA AAI+VYDITS ES RAK W+QEL ++ V+ALAGNK+DL +R+
Sbjct: 73 HSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRK 132
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 512
V+ + YA+ENGL FMETSAKT++NVN+IF EIAK+LPR + AG
Sbjct: 133 VTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 224 bits (571), Expect = 2e-58
Identities = 112/170 (65%), Positives = 134/170 (78%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + T+ V + TVKFEIWDTAGQERY
Sbjct: 13 LVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERY 72
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL ++ V+ALAGNK+DL +R+
Sbjct: 73 HSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRK 132
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 512
V+ + YA+ENGL FMETSAKT+ NVN IF EIAK+LPR + AG
Sbjct: 133 VTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 221 bits (563), Expect = 2e-57
Identities = 110/161 (68%), Positives = 129/161 (80%)
Frame = +3
Query: 3 LVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQERY 182
LVLLG+ GKSSLV+RFVK QF E+QEST+GAAF +QT+ V D TVKFEIWDTAGQERY
Sbjct: 13 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 72
Query: 183 HSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQRE 362
HSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL + V+ALAGNK+DL R+
Sbjct: 73 HSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK 132
Query: 363 VSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 485
VS + YAQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 133 VSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,296,111
Number of Sequences: 369166
Number of extensions: 1817160
Number of successful extensions: 6012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5706
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)