Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_O17
(774 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 262 9e-70
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 262 9e-70
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 262 9e-70
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 256 4e-68
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 256 6e-68
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 256 6e-68
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 256 6e-68
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 228 2e-59
sp|P31582|RHA1_ARATH Ras-related protein RHA1 226 4e-59
sp|P31583|RHN1_NICPL Ras-related protein RHN1 226 5e-59
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 262 bits (669), Expect = 9e-70
Identities = 130/180 (72%), Positives = 153/180 (85%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+
Sbjct: 76 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 570
DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 262 bits (669), Expect = 9e-70
Identities = 130/180 (72%), Positives = 153/180 (85%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+
Sbjct: 76 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 570
DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 262 bits (669), Expect = 9e-70
Identities = 130/180 (72%), Positives = 153/180 (85%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+
Sbjct: 76 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 570
DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 256 bits (655), Expect = 4e-68
Identities = 127/180 (70%), Positives = 150/180 (83%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+
Sbjct: 77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 570
DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E G+
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 256 bits (653), Expect = 6e-68
Identities = 126/170 (74%), Positives = 148/170 (87%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+
Sbjct: 77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 540
DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 256 bits (653), Expect = 6e-68
Identities = 126/170 (74%), Positives = 148/170 (87%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+
Sbjct: 77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 540
DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 256 bits (653), Expect = 6e-68
Identities = 128/186 (68%), Positives = 152/186 (81%)
Frame = +1
Query: 13 NTHTMQNRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTV 192
N ++ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQ+V ++DTTV
Sbjct: 10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTV 69
Query: 193 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIA 372
KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL +A+ VIA
Sbjct: 70 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIA 129
Query: 373 LAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTP 552
LAGNK+DL+ +R V + YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E
Sbjct: 130 LAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNL 189
Query: 553 NAGSGQ 570
+G+
Sbjct: 190 GGAAGR 195
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 228 bits (580), Expect = 2e-59
Identities = 114/178 (64%), Positives = 139/178 (78%)
Frame = +1
Query: 28 QNRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIW 207
++ + KLVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + TV V + TVKFEIW
Sbjct: 5 RHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIW 64
Query: 208 DTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNK 387
DTAGQERYHSLAPMYYRGA AAI+VYDITS ES RAK W+QEL ++ V+ALAGNK
Sbjct: 65 DTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNK 124
Query: 388 SDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 561
+DL +R+V+ + YA+ENGL FMETSAKT++NVN+IF EIAK+LPR + AG
Sbjct: 125 ADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 226 bits (577), Expect = 4e-59
Identities = 112/168 (66%), Positives = 133/168 (79%)
Frame = +1
Query: 31 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 210
N+ + KLVLLG+ GKSSLV+RFVK QF E+QEST+GAAF +QT+ V D TVKFEIWD
Sbjct: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
Query: 211 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 390
TAGQERYHSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL + V+ALAGNK+
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
Query: 391 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 534
DL R+VS + YAQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 126 DLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 226 bits (576), Expect = 5e-59
Identities = 113/171 (66%), Positives = 135/171 (78%)
Frame = +1
Query: 49 KLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQER 228
KLVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + T+ V + TVKFEIWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 229 YHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQR 408
YHSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL ++ V+ALAGNK+DL +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 409 EVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 561
+V+ + YA+ENGL FMETSAKT+ NVN IF EIAK+LPR + AG
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,321,414
Number of Sequences: 369166
Number of extensions: 1786789
Number of successful extensions: 6248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5847
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)