Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_L22
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 150 2e-36
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 150 2e-36
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 150 2e-36
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 145 5e-35
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 144 2e-34
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 143 3e-34
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 143 3e-34
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 141 1e-33
sp|P31583|RHN1_NICPL Ras-related protein RHN1 140 2e-33
sp|P31582|RHA1_ARATH Ras-related protein RHA1 136 3e-32
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 150 bits (380), Expect = 2e-36
Identities = 75/117 (64%), Positives = 92/117 (78%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+ L+
Sbjct: 79 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 138
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 353
+R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 139 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 150 bits (380), Expect = 2e-36
Identities = 75/117 (64%), Positives = 92/117 (78%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+ L+
Sbjct: 79 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 138
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 353
+R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 139 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 150 bits (380), Expect = 2e-36
Identities = 75/117 (64%), Positives = 92/117 (78%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+ L+
Sbjct: 79 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 138
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 353
+R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 139 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 145 bits (367), Expect = 5e-35
Identities = 73/117 (62%), Positives = 90/117 (76%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL +A+ VIALAGNK+ L+
Sbjct: 79 QERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLA 138
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 353
+R V + YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E +G+
Sbjct: 139 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 144 bits (362), Expect = 2e-34
Identities = 71/117 (60%), Positives = 89/117 (76%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+ L+
Sbjct: 80 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 139
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 353
++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E G+
Sbjct: 140 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 143 bits (360), Expect = 3e-34
Identities = 70/107 (65%), Positives = 87/107 (81%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+ L+
Sbjct: 80 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 139
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 323
++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 140 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 143 bits (360), Expect = 3e-34
Identities = 70/107 (65%), Positives = 87/107 (81%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+ L+
Sbjct: 80 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 139
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 323
++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 140 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 141 bits (356), Expect = 1e-33
Identities = 71/114 (62%), Positives = 87/114 (76%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGA AAI+VYDITS ES RAK W+QEL ++ V+ALAGNK+ L
Sbjct: 69 QERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLE 128
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 344
+R+V+ + YA+ENGL FMETSAKT++NVN+IF EIAK+LPR + AG
Sbjct: 129 DKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 140 bits (354), Expect = 2e-33
Identities = 71/114 (62%), Positives = 86/114 (75%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL ++ V+ALAGNK+ L
Sbjct: 69 QERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLE 128
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 344
+R+V+ + YA+ENGL FMETSAKT+ NVN IF EIAK+LPR + AG
Sbjct: 129 DRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 136 bits (343), Expect = 3e-32
Identities = 68/105 (64%), Positives = 81/105 (77%)
Frame = +3
Query: 3 QERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSVLS 182
QERYHSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL + V+ALAGNK+ L
Sbjct: 69 QERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL 128
Query: 183 AQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 317
R+VS + YAQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 129 DARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,702,555
Number of Sequences: 369166
Number of extensions: 1202407
Number of successful extensions: 3660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)