Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_P23
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 262 8e-70
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 262 8e-70
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 262 8e-70
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 256 4e-68
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 256 6e-68
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 256 6e-68
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 255 8e-68
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 227 2e-59
sp|P31582|RHA1_ARATH Ras-related protein RHA1 226 4e-59
sp|P31583|RHN1_NICPL Ras-related protein RHN1 226 5e-59
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 262 bits (669), Expect = 8e-70
Identities = 130/180 (72%), Positives = 153/180 (85%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+
Sbjct: 76 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 542
DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 262 bits (669), Expect = 8e-70
Identities = 130/180 (72%), Positives = 153/180 (85%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+
Sbjct: 76 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 542
DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 262 bits (669), Expect = 8e-70
Identities = 130/180 (72%), Positives = 153/180 (85%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHE+QEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 16 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 75
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL +A+ VIAL+GNK+
Sbjct: 76 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 135
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 542
DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKKLP++E P A S +
Sbjct: 136 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSAR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 256 bits (655), Expect = 4e-68
Identities = 127/180 (70%), Positives = 150/180 (83%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+
Sbjct: 77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 542
DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E G+
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 256 bits (653), Expect = 6e-68
Identities = 126/170 (74%), Positives = 148/170 (87%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+
Sbjct: 77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 512
DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 256 bits (653), Expect = 6e-68
Identities = 126/170 (74%), Positives = 148/170 (87%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQTV ++DTTVKFEIWD
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL +A+ VIALAGNK+
Sbjct: 77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHE 512
DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKKLP++E
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 255 bits (652), Expect = 8e-68
Identities = 127/176 (72%), Positives = 149/176 (84%)
Frame = +3
Query: 15 QFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQ 194
QFKLVLLGESAVGKSSLV+RFVKGQFHEYQEST+GAAFLTQ+V ++DTTVKFEIWDTAGQ
Sbjct: 20 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 79
Query: 195 ERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSA 374
ERYHSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL +A+ VIALAGNK+DL+
Sbjct: 80 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLAN 139
Query: 375 QREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAGSGQ 542
+R V + YA +N LLFMETSAKT+ NVN++FL IAKKLP+ E +G+
Sbjct: 140 KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGR 195
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 227 bits (579), Expect = 2e-59
Identities = 114/171 (66%), Positives = 136/171 (79%)
Frame = +3
Query: 21 KLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQER 200
KLVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + TV V + TVKFEIWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQER 71
Query: 201 YHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQR 380
YHSLAPMYYRGA AAI+VYDITS ES RAK W+QEL ++ V+ALAGNK+DL +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKR 131
Query: 381 EVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 533
+V+ + YA+ENGL FMETSAKT++NVN+IF EIAK+LPR + AG
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 226 bits (577), Expect = 4e-59
Identities = 112/168 (66%), Positives = 133/168 (79%)
Frame = +3
Query: 3 NRQVQFKLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWD 182
N+ + KLVLLG+ GKSSLV+RFVK QF E+QEST+GAAF +QT+ V D TVKFEIWD
Sbjct: 6 NKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWD 65
Query: 183 TAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKS 362
TAGQERYHSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL + V+ALAGNK+
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
Query: 363 DLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPR 506
DL R+VS + YAQEN L FMETSAKT++NV +IF EIAK+LPR
Sbjct: 126 DLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 226 bits (576), Expect = 5e-59
Identities = 113/171 (66%), Positives = 135/171 (78%)
Frame = +3
Query: 21 KLVLLGESAVGKSSLVMRFVKGQFHEYQESTVGAAFLTQTVVVEDTTVKFEIWDTAGQER 200
KLVLLG+ GKSSLV+RFVKGQF E+QEST+GAAF + T+ V + TVKFEIWDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 201 YHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTEKATSVKVIALAGNKSDLSAQR 380
YHSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL ++ V+ALAGNK+DL +R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 381 EVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKKLPRHEVTTPNAG 533
+V+ + YA+ENGL FMETSAKT+ NVN IF EIAK+LPR + AG
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAG 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,884,207
Number of Sequences: 369166
Number of extensions: 1714219
Number of successful extensions: 6109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5711
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)