Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A06
(619 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A 186 4e-47
sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A 186 4e-47
sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A >gi|471170... 186 4e-47
sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B >gi|465776... 179 4e-45
sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L... 179 5e-45
sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C 178 9e-45
sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C 178 9e-45
sp|P29687|RAB5_TOBAC Ras-related protein Rab5 173 4e-43
sp|P31583|RHN1_NICPL Ras-related protein RHN1 172 8e-43
sp|P31582|RHA1_ARATH Ras-related protein RHA1 169 4e-42
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A
Length = 215
Score = 186 bits (472), Expect = 4e-47
Identities = 91/135 (67%), Positives = 110/135 (81%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL
Sbjct: 61 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 120
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIAL+GNK+DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKK
Sbjct: 121 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 180
Query: 363 LPRHEVTTPNAGSGQ 407
LP++E P A S +
Sbjct: 181 LPKNEPQNPGANSAR 195
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A
Length = 215
Score = 186 bits (472), Expect = 4e-47
Identities = 91/135 (67%), Positives = 110/135 (81%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL
Sbjct: 61 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 120
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIAL+GNK+DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKK
Sbjct: 121 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 180
Query: 363 LPRHEVTTPNAGSGQ 407
LP++E P A S +
Sbjct: 181 LPKNEPQNPGANSAR 195
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A
sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A
Length = 215
Score = 186 bits (472), Expect = 4e-47
Identities = 91/135 (67%), Positives = 110/135 (81%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT++ESF RAK W++EL
Sbjct: 61 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 120
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIAL+GNK+DL+ +R V + +YA +N LLFMETSAKTS NVNEIF+ IAKK
Sbjct: 121 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 180
Query: 363 LPRHEVTTPNAGSGQ 407
LP++E P A S +
Sbjct: 181 LPKNEPQNPGANSAR 195
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B
sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B
Length = 215
Score = 179 bits (455), Expect = 4e-45
Identities = 88/135 (65%), Positives = 108/135 (80%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
+V ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT+QE+F RAKTW++EL
Sbjct: 61 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR 120
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIALAGNK+DL+ +R V + YA +N LLFMETSAKT+ NVN++FL IAKK
Sbjct: 121 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK 180
Query: 363 LPRHEVTTPNAGSGQ 407
LP+ E +G+
Sbjct: 181 LPKSEPQNLGGAAGR 195
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 179 bits (454), Expect = 5e-45
Identities = 87/135 (64%), Positives = 107/135 (79%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL
Sbjct: 62 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 121
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIALAGNK+DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKK
Sbjct: 122 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 181
Query: 363 LPRHEVTTPNAGSGQ 407
LP++E G+
Sbjct: 182 LPKNEPQNATGAPGR 196
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C
Length = 216
Score = 178 bits (452), Expect = 9e-45
Identities = 86/125 (68%), Positives = 105/125 (84%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL
Sbjct: 62 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 121
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIALAGNK+DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKK
Sbjct: 122 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 181
Query: 363 LPRHE 377
LP++E
Sbjct: 182 LPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C
Length = 216
Score = 178 bits (452), Expect = 9e-45
Identities = 86/125 (68%), Positives = 105/125 (84%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV ++DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT+ ++F RAK W++EL
Sbjct: 62 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 121
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+A+ VIALAGNK+DL+++R V + YA +N LLFMETSAKT+ NVNEIF+ IAKK
Sbjct: 122 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 181
Query: 363 LPRHE 377
LP++E
Sbjct: 182 LPKNE 186
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5
Length = 200
Score = 173 bits (438), Expect = 4e-43
Identities = 86/132 (65%), Positives = 103/132 (78%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
TV V + TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITS ES RAK W+QEL +
Sbjct: 51 TVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQK 110
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+ V+ALAGNK+DL +R+V+ + YA+ENGL FMETSAKT++NVN+IF EIAK+
Sbjct: 111 QGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKR 170
Query: 363 LPRHEVTTPNAG 398
LPR + AG
Sbjct: 171 LPRAQPAQNPAG 182
>sp|P31583|RHN1_NICPL Ras-related protein RHN1
Length = 200
Score = 172 bits (435), Expect = 8e-43
Identities = 85/132 (64%), Positives = 102/132 (77%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
T+ V + TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITS +SF RAK W+QEL +
Sbjct: 51 TLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQK 110
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+ V+ALAGNK+DL +R+V+ + YA+ENGL FMETSAKT+ NVN IF EIAK+
Sbjct: 111 QGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKR 170
Query: 363 LPRHEVTTPNAG 398
LPR + AG
Sbjct: 171 LPRAQPAQNPAG 182
>sp|P31582|RHA1_ARATH Ras-related protein RHA1
Length = 200
Score = 169 bits (429), Expect = 4e-42
Identities = 83/123 (67%), Positives = 97/123 (78%)
Frame = +3
Query: 3 TVVVEDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSQESFHRAKTWIQELTE 182
T+ V D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+V+DIT+Q SF RAK W+QEL
Sbjct: 51 TLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQA 110
Query: 183 KATSVKVIALAGNKSDLSAQREVSISDGSTYAQENGLLFMETSAKTSSNVNEIFLEIAKK 362
+ V+ALAGNK+DL R+VS + YAQEN L FMETSAKT++NV +IF EIAK+
Sbjct: 111 QGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKR 170
Query: 363 LPR 371
LPR
Sbjct: 171 LPR 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,148,787
Number of Sequences: 369166
Number of extensions: 1387730
Number of successful extensions: 4520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4337
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)