Planarian EST Database

DrC_00955

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00955 TATCAACAGAATTTAAATCAATTACGTGACATCAGTATAATGGACGCCTACCATGAAAGA TCTTACATTATGGTCAAACCAGATGGAGTTCAACGAGGATTGGTTGGAACTATCATAACA CGCTTCGAGCAACGGGGTTTTAAATTAATTGCAATAAAAATGATGCAACCTGATAAAAAA TTGTTGGAAGTTCATTATCAAGAGTTGAAAGATAAACCATTCTTTCCAAAACTGATAGAA TATATGCTCTCTGGTCCAGTGGTTTGTATGGTTTGGCAAGGATATGAGATGGTTAAAATC GGCCGAGCTCTTTTGGGTGCTACAAGACCAATTGATTCTTTGCCCGGAACAATTCGAGGA GATTTTGCTCAGGTAGCTGGGAGAAATATTGTTCATGGATCTGATTCAGTGGAAAGTGCT AAAAGAGAGATTGGACTTTGGTTTACAGCAAAGGATTTAGGAGAATATAAATTATGTGCC GACATATGGGTGCAAGAATAATTGATTATTACCATCATACTAATTAGTCATTTTGGAATA AACATTCTGAATCCTTGTTTAGGTGTAGAATTAACGTTTTGCTAAAATTTAACCTTTATA TCGGTAAAATGCATTTATCTATCTTAAGAATGCAATTTTTGTTTTAACTAACCAAGAGAA TTTTATCCATTAAAAATCTGAACCTGGAACATTTCACTTAAGTTAATTATAGGATTACAC ATTTTAATGAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00955
         (731 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TFN0|NDK_EMENI  Nucleoside diphosphate kinase (NDK) (ND...   205   1e-52
sp|P27950|NDK_GINCI  Nucleoside diphosphate kinase (NDK) (ND...   203   3e-52
sp|P19804|NDKB_RAT  Nucleoside diphosphate kinase B (NDK B) ...   199   8e-51
sp|Q50KA9|NDKA_CANFA  Nucleoside diphosphate kinase A (NDK A...   199   8e-51
sp|P15531|NDKA_HUMAN  Nucleoside diphosphate kinase A (NDK A...   197   2e-50
sp|P15532|NDKA_MOUSE  Nucleoside diphosphate kinase A (NDK A...   197   3e-50
sp|Q05982|NDKA_RAT  Nucleoside diphosphate kinase A (NDK A) ...   196   5e-50
sp|Q01768|NDKB_MOUSE  Nucleoside diphosphate kinase B (NDK B...   196   7e-50
sp|P70011|NDKA2_XENLA  Nucleoside diphosphate kinase A2 (NDK...   196   7e-50
sp|P52174|NDKA_BOVIN  Nucleoside diphosphate kinase NBR-A (N...   196   7e-50

>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
          Length = 153

 Score =  205 bits (521), Expect = 1e-52
 Identities = 95/148 (64%), Positives = 118/148 (79%)
 Frame = +1

Query: 55  ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 234
           E+++I +KPDGVQRGLVG II+RFE RGFKL A+K+  P + LLE HY +LK+KPFFP L
Sbjct: 4   EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGL 63

Query: 235 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 414
           + YMLSGP+V MVW+G ++VK GR +LGAT P+ S PGTIRGDFA   GRN+ HGSDSVE
Sbjct: 64  VTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVE 123

Query: 415 SAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SAK+EIGLWFT +++  YKL A  W+ E
Sbjct: 124 SAKKEIGLWFTPEEIQNYKLNAFGWIYE 151

>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
          Length = 151

 Score =  203 bits (517), Expect = 3e-52
 Identities = 96/148 (64%), Positives = 115/148 (77%)
 Frame = +1

Query: 55  ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 234
           ER++I VKPDGVQR +VG +I RFEQ+GFKL+A+K +Q  K LLE HY EL DKPF+PKL
Sbjct: 4   ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKL 63

Query: 235 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 414
           I+YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSDSVE
Sbjct: 64  IKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 123

Query: 415 SAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SAK+EI LWF  ++L EY+ CA  W+ E
Sbjct: 124 SAKKEISLWFKREELVEYQNCAQDWIYE 151

>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
          Length = 152

 Score =  199 bits (505), Expect = 8e-51
 Identities = 92/148 (62%), Positives = 117/148 (79%)
 Frame = +1

Query: 55  ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 234
           ER++I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++  ++ L+ HY +LKD+PFFP L
Sbjct: 5   ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64

Query: 235 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 414
           ++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSDSVE
Sbjct: 65  VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124

Query: 415 SAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SA++EIGLWF  ++L +YK CA  WV E
Sbjct: 125 SAEKEIGLWFKPEELIDYKSCAHDWVYE 152

>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
          Length = 152

 Score =  199 bits (505), Expect = 8e-51
 Identities = 93/151 (61%), Positives = 117/151 (77%)
 Frame = +1

Query: 46  AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 225
           A  ER++I +KPDGVQR LVG II RFEQ+GF+LIA+K++Q  + LL+ HY +LKD+PFF
Sbjct: 2   ANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFF 61

Query: 226 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 405
             L++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSD
Sbjct: 62  AGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121

Query: 406 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SVESA++EIGLWF  ++L +YK CA  W+ E
Sbjct: 122 SVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152

>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
           metastatic process-associated protein) (Metastasis
           inhibition factor nm23) (nm23-H1) (Granzyme A-activated
           DNase) (GAAD)
          Length = 152

 Score =  197 bits (501), Expect = 2e-50
 Identities = 91/148 (61%), Positives = 114/148 (77%)
 Frame = +1

Query: 55  ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 234
           ER++I +KPDGVQRGLVG II RFEQ+GF+L+ +K MQ  + LL+ HY +LKD+PFF  L
Sbjct: 5   ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 64

Query: 235 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 414
           ++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSDSVE
Sbjct: 65  VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124

Query: 415 SAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SA++EIGLWF  ++L +Y  CA  W+ E
Sbjct: 125 SAEKEIGLWFHPEELVDYTSCAQNWIYE 152

>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
           metastatic process-associated protein) (Metastasis
           inhibition factor NM23) (NDPK-A) (nm23-M1)
          Length = 152

 Score =  197 bits (500), Expect = 3e-50
 Identities = 91/151 (60%), Positives = 115/151 (76%)
 Frame = +1

Query: 46  AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 225
           A  ER++I +KPDGVQRGLVG II RFEQ+GF+L+ +K +Q  + LL+ HY +LKD+PFF
Sbjct: 2   ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFF 61

Query: 226 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 405
             L++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSD
Sbjct: 62  TGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121

Query: 406 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SV+SA++EI LWF  ++L EYK CA  W+ E
Sbjct: 122 SVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152

>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
           metastatic process-associated protein) (Metastasis
           inhibition factor NM23)
          Length = 152

 Score =  196 bits (498), Expect = 5e-50
 Identities = 91/151 (60%), Positives = 115/151 (76%)
 Frame = +1

Query: 46  AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 225
           A  ER++I +KPDGVQRGLVG II RFEQ+GF+L+ +K +Q  + LL+ HY +LKD+PFF
Sbjct: 2   ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFF 61

Query: 226 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 405
             L++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSD
Sbjct: 62  SGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121

Query: 406 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SVESA++EI LWF  ++L +YK CA  W+ E
Sbjct: 122 SVESAEKEISLWFQPEELVDYKSCAQNWIYE 152

>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
           (P18)
          Length = 152

 Score =  196 bits (497), Expect = 7e-50
 Identities = 91/148 (61%), Positives = 116/148 (78%)
 Frame = +1

Query: 55  ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 234
           ER++I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++  ++ L+ HY +LKD+PFFP L
Sbjct: 5   ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64

Query: 235 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 414
           ++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSDSVE
Sbjct: 65  VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124

Query: 415 SAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SA++EI LWF  ++L +YK CA  WV E
Sbjct: 125 SAEKEIHLWFKPEELIDYKSCAHDWVYE 152

>sp|P70011|NDKA2_XENLA Nucleoside diphosphate kinase A2 (NDK A2) (NDP kinase A2)
           (NM23/nucleoside diphosphate kinase A2)
          Length = 154

 Score =  196 bits (497), Expect = 7e-50
 Identities = 92/153 (60%), Positives = 115/153 (75%)
 Frame = +1

Query: 40  MDAYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKP 219
           M A  ER++I +KPDGVQRGL+G II RFEQ+GF+L+A+K +Q  + LL  HY +LKD+P
Sbjct: 1   MAANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRP 60

Query: 220 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 399
           F+P L+EYM SGPV+ MVW+G  +VK GR +LG T P DS PGTIRGD     GRNI+HG
Sbjct: 61  FYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHG 120

Query: 400 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SDSV+SA +EI LWF  ++L EYK CA  WV E
Sbjct: 121 SDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153

>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
          Length = 152

 Score =  196 bits (497), Expect = 7e-50
 Identities = 91/151 (60%), Positives = 115/151 (76%)
 Frame = +1

Query: 46  AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 225
           A  ER++I +KPDGVQRGL+G II RFEQ+GF+L+A+K M+  + LL+ HY +LKD+PFF
Sbjct: 2   ANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFF 61

Query: 226 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 405
             L++YM SGPVV MVW+G  +VK GR +LG T P DS PGTIRGDF    GRNI+HGSD
Sbjct: 62  AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121

Query: 406 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 498
           SVESA++EI LWF  ++L  YK CA  W+ E
Sbjct: 122 SVESAEKEIALWFHPEELVNYKSCAQNWIYE 152

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,692,493
Number of Sequences: 369166
Number of extensions: 1865803
Number of successful extensions: 4436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4398
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00955

Planaria EST Database

DrC_00955

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail