Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_O07
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 130 8e-31
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 130 1e-30
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 129 2e-30
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 127 9e-30
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 126 1e-29
sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B... 126 2e-29
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 124 6e-29
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 124 7e-29
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 124 7e-29
sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (N... 124 1e-28
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 130 bits (328), Expect = 8e-31
Identities = 60/93 (64%), Positives = 71/93 (76%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
F+PKLI+YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 59 FYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 118
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESAK+EI LWF ++L EY+ CA W+ E
Sbjct: 119 SDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 130 bits (327), Expect = 1e-30
Identities = 60/93 (64%), Positives = 73/93 (78%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FFP L+ YMLSGP+V MVW+G ++VK GR +LGAT P+ S PGTIRGDFA GRN+ HG
Sbjct: 59 FFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHG 118
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESAK+EIGLWFT +++ YKL A W+ E
Sbjct: 119 SDSVESAKKEIGLWFTPEEIQNYKLNAFGWIYE 151
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 129 bits (325), Expect = 2e-30
Identities = 60/93 (64%), Positives = 71/93 (76%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FFP L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESA++EIGLWF ++L +YK CA WV E
Sbjct: 120 SDSVESAEKEIGLWFKPEELIDYKSCAHDWVYE 152
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 127 bits (319), Expect = 9e-30
Identities = 58/93 (62%), Positives = 70/93 (75%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESA++EIGLWF ++L +YK CA W+ E
Sbjct: 120 SDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 126 bits (317), Expect = 1e-29
Identities = 59/93 (63%), Positives = 70/93 (75%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FFP L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESA++EI LWF ++L +YK CA WV E
Sbjct: 120 SDSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152
>sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-H2)
(C-myc purine-binding transcription factor PUF)
Length = 152
Score = 126 bits (316), Expect = 2e-29
Identities = 58/93 (62%), Positives = 70/93 (75%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FFP L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSV+SA++EI LWF ++L +YK CA WV E
Sbjct: 120 SDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 124 bits (312), Expect = 6e-29
Identities = 57/93 (61%), Positives = 69/93 (74%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESA++EI LWF ++L +YK CA W+ E
Sbjct: 120 SDSVESAEKEISLWFQPEELVDYKSCAQNWIYE 152
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 124 bits (311), Expect = 7e-29
Identities = 57/93 (61%), Positives = 69/93 (74%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSV+SA++EI LWF ++L EYK CA W+ E
Sbjct: 120 SDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 124 bits (311), Expect = 7e-29
Identities = 57/93 (61%), Positives = 69/93 (74%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESA++EIGLWF ++L +Y CA W+ E
Sbjct: 120 SDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (NDK NBR-B) (NDP kinase NBR-B)
Length = 152
Score = 124 bits (310), Expect = 1e-28
Identities = 57/93 (61%), Positives = 68/93 (73%)
Frame = +3
Query: 3 FFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHG 182
FF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HG
Sbjct: 60 FFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 119
Query: 183 SDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 281
SDSVESA++EI LWF ++L YK CA W+ E
Sbjct: 120 SDSVESAEKEIALWFRPEELVNYKSCAQNWIYE 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,350,839
Number of Sequences: 369166
Number of extensions: 1027187
Number of successful extensions: 2682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2658
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)