Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H05
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 205 8e-53
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 203 2e-52
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 199 6e-51
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 199 6e-51
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 197 2e-50
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 197 2e-50
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 196 4e-50
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 196 5e-50
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 196 5e-50
sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B... 195 6e-50
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 205 bits (521), Expect = 8e-53
Identities = 95/148 (64%), Positives = 118/148 (79%)
Frame = +3
Query: 24 ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 203
E+++I +KPDGVQRGLVG II+RFE RGFKL A+K+ P + LLE HY +LK+KPFFP L
Sbjct: 4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGL 63
Query: 204 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 383
+ YMLSGP+V MVW+G ++VK GR +LGAT P+ S PGTIRGDFA GRN+ HGSDSVE
Sbjct: 64 VTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVE 123
Query: 384 SAKREIGLWFTAKDLGEYKLCADIWVQE 467
SAK+EIGLWFT +++ YKL A W+ E
Sbjct: 124 SAKKEIGLWFTPEEIQNYKLNAFGWIYE 151
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 203 bits (517), Expect = 2e-52
Identities = 96/148 (64%), Positives = 115/148 (77%)
Frame = +3
Query: 24 ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 203
ER++I VKPDGVQR +VG +I RFEQ+GFKL+A+K +Q K LLE HY EL DKPF+PKL
Sbjct: 4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKL 63
Query: 204 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 383
I+YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVE
Sbjct: 64 IKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 123
Query: 384 SAKREIGLWFTAKDLGEYKLCADIWVQE 467
SAK+EI LWF ++L EY+ CA W+ E
Sbjct: 124 SAKKEISLWFKREELVEYQNCAQDWIYE 151
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 199 bits (505), Expect = 6e-51
Identities = 92/148 (62%), Positives = 117/148 (79%)
Frame = +3
Query: 24 ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 203
ER++I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 204 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 383
++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVE
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 384 SAKREIGLWFTAKDLGEYKLCADIWVQE 467
SA++EIGLWF ++L +YK CA WV E
Sbjct: 125 SAEKEIGLWFKPEELIDYKSCAHDWVYE 152
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 199 bits (505), Expect = 6e-51
Identities = 93/151 (61%), Positives = 117/151 (77%)
Frame = +3
Query: 15 AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 194
A ER++I +KPDGVQR LVG II RFEQ+GF+LIA+K++Q + LL+ HY +LKD+PFF
Sbjct: 2 ANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFF 61
Query: 195 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 374
L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSD
Sbjct: 62 AGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 375 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 467
SVESA++EIGLWF ++L +YK CA W+ E
Sbjct: 122 SVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 197 bits (501), Expect = 2e-50
Identities = 91/148 (61%), Positives = 114/148 (77%)
Frame = +3
Query: 24 ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 203
ER++I +KPDGVQRGLVG II RFEQ+GF+L+ +K MQ + LL+ HY +LKD+PFF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 64
Query: 204 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 383
++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVE
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 384 SAKREIGLWFTAKDLGEYKLCADIWVQE 467
SA++EIGLWF ++L +Y CA W+ E
Sbjct: 125 SAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 197 bits (500), Expect = 2e-50
Identities = 91/151 (60%), Positives = 115/151 (76%)
Frame = +3
Query: 15 AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 194
A ER++I +KPDGVQRGLVG II RFEQ+GF+L+ +K +Q + LL+ HY +LKD+PFF
Sbjct: 2 ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFF 61
Query: 195 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 374
L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSD
Sbjct: 62 TGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 375 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 467
SV+SA++EI LWF ++L EYK CA W+ E
Sbjct: 122 SVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 196 bits (498), Expect = 4e-50
Identities = 91/151 (60%), Positives = 115/151 (76%)
Frame = +3
Query: 15 AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 194
A ER++I +KPDGVQRGLVG II RFEQ+GF+L+ +K +Q + LL+ HY +LKD+PFF
Sbjct: 2 ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFF 61
Query: 195 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 374
L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSD
Sbjct: 62 SGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 375 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 467
SVESA++EI LWF ++L +YK CA W+ E
Sbjct: 122 SVESAEKEISLWFQPEELVDYKSCAQNWIYE 152
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 196 bits (497), Expect = 5e-50
Identities = 91/148 (61%), Positives = 116/148 (78%)
Frame = +3
Query: 24 ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 203
ER++I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 204 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 383
++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVE
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 124
Query: 384 SAKREIGLWFTAKDLGEYKLCADIWVQE 467
SA++EI LWF ++L +YK CA WV E
Sbjct: 125 SAEKEIHLWFKPEELIDYKSCAHDWVYE 152
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 196 bits (497), Expect = 5e-50
Identities = 91/151 (60%), Positives = 115/151 (76%)
Frame = +3
Query: 15 AYHERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFF 194
A ER++I +KPDGVQRGL+G II RFEQ+GF+L+A+K M+ + LL+ HY +LKD+PFF
Sbjct: 2 ANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFF 61
Query: 195 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSD 374
L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSD
Sbjct: 62 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 375 SVESAKREIGLWFTAKDLGEYKLCADIWVQE 467
SVESA++EI LWF ++L YK CA W+ E
Sbjct: 122 SVESAEKEIALWFHPEELVNYKSCAQNWIYE 152
>sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-H2)
(C-myc purine-binding transcription factor PUF)
Length = 152
Score = 195 bits (496), Expect = 6e-50
Identities = 90/148 (60%), Positives = 116/148 (78%)
Frame = +3
Query: 24 ERSYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKL 203
ER++I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 204 IEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVE 383
++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSV+
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 124
Query: 384 SAKREIGLWFTAKDLGEYKLCADIWVQE 467
SA++EI LWF ++L +YK CA WV E
Sbjct: 125 SAEKEISLWFKPEELVDYKSCAHDWVYE 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,551,102
Number of Sequences: 369166
Number of extensions: 1602974
Number of successful extensions: 4216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4178
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)