Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F23
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 77 2e-14
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 75 4e-14
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 75 5e-14
sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (N... 74 1e-13
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 74 1e-13
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 73 2e-13
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 73 2e-13
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 73 2e-13
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 72 3e-13
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 72 4e-13
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/61 (60%), Positives = 44/61 (72%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P+ GTIRGDFA GRN+ HGSDSVESAK+EIGLWFT +++ YKL A W+
Sbjct: 91 GATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGWIY 150
Query: 271 E 273
E
Sbjct: 151 E 151
Score = 47.4 bits (111), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +2
Query: 2 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLG 94
P L+ YMLSGP+V MVW+G ++VK GR +LG
Sbjct: 61 PGLVTYMLSGPIVAMVWEGKDVVKTGRTILG 91
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 75.5 bits (184), Expect = 4e-14
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EIGLWF ++L YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 45.4 bits (106), Expect = 4e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 8 LIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 64 LVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 75.1 bits (183), Expect = 5e-14
Identities = 37/61 (60%), Positives = 42/61 (68%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EIGLWF ++L YK CA WV
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 47.0 bits (110), Expect = 1e-05
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 2 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
P L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 62 PGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (NDK NBR-B) (NDP kinase NBR-B)
Length = 152
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/61 (57%), Positives = 41/61 (67%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 8 LIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/61 (57%), Positives = 42/61 (68%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESAK+EI LWF ++L +Y+ CA W+
Sbjct: 91 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIY 150
Query: 271 E 273
E
Sbjct: 151 E 151
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +2
Query: 2 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
PKLI+YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 61 PKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADS 98
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 73.2 bits (178), Expect = 2e-13
Identities = 35/61 (57%), Positives = 41/61 (67%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 8 LIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 73.2 bits (178), Expect = 2e-13
Identities = 35/61 (57%), Positives = 41/61 (67%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 8 LIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 72.8 bits (177), Expect = 2e-13
Identities = 35/61 (57%), Positives = 41/61 (67%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EIGLWF ++L Y CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 8 LIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 72.4 bits (176), Expect = 3e-13
Identities = 34/61 (55%), Positives = 42/61 (68%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSV+SA++EI LWF ++L +YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 8 LIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 72.0 bits (175), Expect = 4e-13
Identities = 36/61 (59%), Positives = 41/61 (67%)
Frame = +1
Query: 91 GFTRPI*FFAGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGKYKLCADIWVQ 270
G T P GTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA WV
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVY 151
Query: 271 E 273
E
Sbjct: 152 E 152
Score = 47.0 bits (110), Expect = 1e-05
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 2 PKLIEYMLSGPVVCMVWQGYEMVKIGRALLGLQDQFDS 115
P L++YM SGPVV MVW+G +VK GR +LG + DS
Sbjct: 62 PGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADS 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,195,221
Number of Sequences: 369166
Number of extensions: 794779
Number of successful extensions: 2223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)