Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_J09
(373 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 145 2e-35
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 145 2e-35
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 144 6e-35
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 142 3e-34
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 141 5e-34
sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B... 140 7e-34
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 139 2e-33
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 139 2e-33
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 139 2e-33
sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (N... 138 3e-33
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 145 bits (367), Expect = 2e-35
Identities = 66/102 (64%), Positives = 81/102 (79%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LK+KPFFP L+ YMLSGP+V MVW+G ++VK GR +LGAT P+ S PGTIRGDFA
Sbjct: 50 HYSDLKEKPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAI 109
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRN+ HGSDSVESAK+EIGLWFT +++ YKL A W+ E
Sbjct: 110 DVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGWIYE 151
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 145 bits (367), Expect = 2e-35
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY EL DKPF+PKLI+YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 50 HYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 109
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESAK+EI LWF ++L EY+ CA W+ E
Sbjct: 110 QVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 144 bits (363), Expect = 6e-35
Identities = 66/102 (64%), Positives = 79/102 (77%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESA++EIGLWF ++L +YK CA WV E
Sbjct: 111 QVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVYE 152
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 142 bits (357), Expect = 3e-34
Identities = 64/102 (62%), Positives = 78/102 (76%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESA++EIGLWF ++L +YK CA W+ E
Sbjct: 111 QVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 141 bits (355), Expect = 5e-34
Identities = 65/102 (63%), Positives = 78/102 (76%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESA++EI LWF ++L +YK CA WV E
Sbjct: 111 QVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152
>sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-H2)
(C-myc purine-binding transcription factor PUF)
Length = 152
Score = 140 bits (354), Expect = 7e-34
Identities = 64/102 (62%), Positives = 78/102 (76%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSV+SA++EI LWF ++L +YK CA WV E
Sbjct: 111 QVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 139 bits (351), Expect = 2e-33
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSV+SA++EI LWF ++L EYK CA W+ E
Sbjct: 111 QVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 139 bits (350), Expect = 2e-33
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESA++EI LWF ++L +YK CA W+ E
Sbjct: 111 QVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIYE 152
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 139 bits (350), Expect = 2e-33
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESA++EIGLWF ++L +Y CA W+ E
Sbjct: 111 QVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (NDK NBR-B) (NDP kinase NBR-B)
Length = 152
Score = 138 bits (348), Expect = 3e-33
Identities = 63/102 (61%), Positives = 76/102 (74%)
Frame = +3
Query: 9 HYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQ 188
HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF
Sbjct: 51 HYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 110
Query: 189 VAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQE 314
GRNI+HGSDSVESA++EI LWF ++L YK CA W+ E
Sbjct: 111 QVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIYE 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,491,916
Number of Sequences: 369166
Number of extensions: 976216
Number of successful extensions: 2792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2760
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)