Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O06
(457 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 181 7e-46
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 180 1e-45
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 174 6e-44
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 172 2e-43
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 171 7e-43
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 170 1e-42
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 169 2e-42
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 169 2e-42
sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B... 169 3e-42
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 169 3e-42
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 181 bits (459), Expect = 7e-46
Identities = 85/132 (64%), Positives = 101/132 (76%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG +I RFEQ+GFKL+A+K +Q K LLE HY EL DKPF+PKLI+YM SGPVV MVW+G
Sbjct: 20 VGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEG 79
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESAK+EI LWF ++L
Sbjct: 80 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELV 139
Query: 363 EYKLCADIWVQE 398
EY+ CA W+ E
Sbjct: 140 EYQNCAQDWIYE 151
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 180 bits (457), Expect = 1e-45
Identities = 84/132 (63%), Positives = 103/132 (78%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II+RFE RGFKL A+K+ P + LLE HY +LK+KPFFP L+ YMLSGP+V MVW+G
Sbjct: 20 VGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEG 79
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
++VK GR +LGAT P+ S PGTIRGDFA GRN+ HGSDSVESAK+EIGLWFT +++
Sbjct: 80 KDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQ 139
Query: 363 EYKLCADIWVQE 398
YKL A W+ E
Sbjct: 140 NYKLNAFGWIYE 151
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 174 bits (442), Expect = 6e-44
Identities = 81/132 (61%), Positives = 102/132 (77%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+LIA+K++Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELV 140
Query: 363 EYKLCADIWVQE 398
+YK CA W+ E
Sbjct: 141 DYKSCAQNWIYE 152
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 172 bits (437), Expect = 2e-43
Identities = 80/132 (60%), Positives = 102/132 (77%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELI 140
Query: 363 EYKLCADIWVQE 398
+YK CA WV E
Sbjct: 141 DYKSCAHDWVYE 152
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 171 bits (433), Expect = 7e-43
Identities = 79/132 (59%), Positives = 99/132 (75%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+L+ +K MQ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELV 140
Query: 363 EYKLCADIWVQE 398
+Y CA W+ E
Sbjct: 141 DYTSCAQNWIYE 152
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 170 bits (431), Expect = 1e-42
Identities = 78/132 (59%), Positives = 99/132 (75%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+L+ +K +Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSV+SA++EI LWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELV 140
Query: 363 EYKLCADIWVQE 398
EYK CA W+ E
Sbjct: 141 EYKSCAQNWIYE 152
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 169 bits (429), Expect = 2e-42
Identities = 79/132 (59%), Positives = 101/132 (76%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELI 140
Query: 363 EYKLCADIWVQE 398
+YK CA WV E
Sbjct: 141 DYKSCAHDWVYE 152
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 169 bits (429), Expect = 2e-42
Identities = 78/132 (59%), Positives = 99/132 (75%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+L+ +K +Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELV 140
Query: 363 EYKLCADIWVQE 398
+YK CA W+ E
Sbjct: 141 DYKSCAQNWIYE 152
>sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-H2)
(C-myc purine-binding transcription factor PUF)
Length = 152
Score = 169 bits (428), Expect = 3e-42
Identities = 78/132 (59%), Positives = 101/132 (76%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
VG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G
Sbjct: 21 VGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSV+SA++EI LWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELV 140
Query: 363 EYKLCADIWVQE 398
+YK CA WV E
Sbjct: 141 DYKSCAHDWVYE 152
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 169 bits (428), Expect = 3e-42
Identities = 78/132 (59%), Positives = 99/132 (75%)
Frame = +3
Query: 3 VGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQG 182
+G II RFEQ+GF+L+A+K M+ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G
Sbjct: 21 IGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEG 80
Query: 183 YEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLG 362
+VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L
Sbjct: 81 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELV 140
Query: 363 EYKLCADIWVQE 398
YK CA W+ E
Sbjct: 141 NYKSCAQNWIYE 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,936,035
Number of Sequences: 369166
Number of extensions: 1209085
Number of successful extensions: 3410
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3375
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)