Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_M19
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 166 2e-41
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 166 2e-41
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 159 2e-39
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 157 9e-39
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 156 3e-38
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 155 5e-38
sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (N... 155 6e-38
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 154 8e-38
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 154 8e-38
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 154 8e-38
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 166 bits (421), Expect = 2e-41
Identities = 77/123 (62%), Positives = 95/123 (77%)
Frame = +2
Query: 47 NVGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRA 226
N GFKL A+K+ P + LLE HY +LK+KPFFP L+ YMLSGP+V MVW+G ++VK GR
Sbjct: 29 NRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRT 88
Query: 227 LLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIW 406
+LGAT P+ S PGTIRGDFA GRN+ HGSDSVESAK+EIGLWFT +++ YKL A W
Sbjct: 89 ILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGW 148
Query: 407 VQE 415
+ E
Sbjct: 149 IYE 151
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGLVG II+RFE RGF
Sbjct: 14 GVQRGLVGPIISRFENRGF 32
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 166 bits (421), Expect = 2e-41
Identities = 78/121 (64%), Positives = 92/121 (76%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GFKL+A+K +Q K LLE HY EL DKPF+PKLI+YM SGPVV MVW+G +VK GR +L
Sbjct: 31 GFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVML 90
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESAK+EI LWF ++L EY+ CA W+
Sbjct: 91 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIY 150
Query: 413 E 415
E
Sbjct: 151 E 151
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQR +VG +I RFEQ+GF
Sbjct: 14 GVQRCIVGEVIKRFEQKGF 32
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 159 bits (403), Expect = 2e-39
Identities = 73/121 (60%), Positives = 93/121 (76%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+LIA+K++Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L +YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 33.5 bits (75), Expect = 0.26
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQR LVG II RFEQ+GF
Sbjct: 15 GVQRSLVGEIIKRFEQKGF 33
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 157 bits (398), Expect = 9e-39
Identities = 72/121 (59%), Positives = 93/121 (76%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L +YK CA WV
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGLVG II RFEQ+GF
Sbjct: 15 GVQRGLVGEIIKRFEQKGF 33
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 156 bits (394), Expect = 3e-38
Identities = 71/121 (58%), Positives = 90/121 (74%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+ +K MQ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EIGLWF ++L +Y CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGLVG II RFEQ+GF
Sbjct: 15 GVQRGLVGEIIKRFEQKGF 33
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 155 bits (392), Expect = 5e-38
Identities = 70/121 (57%), Positives = 90/121 (74%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+ +K +Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSV+SA++EI LWF ++L EYK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGLVG II RFEQ+GF
Sbjct: 15 GVQRGLVGEIIKRFEQKGF 33
>sp|P52175|NDKB_BOVIN Nucleoside diphosphate kinase NBR-B (NDK NBR-B) (NDP kinase NBR-B)
Length = 152
Score = 155 bits (391), Expect = 6e-38
Identities = 71/121 (58%), Positives = 90/121 (74%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+A+K M+ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 34.7 bits (78), Expect = 0.12
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGL+G II RFEQ+GF
Sbjct: 15 GVQRGLMGEIIKRFEQKGF 33
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 154 bits (390), Expect = 8e-38
Identities = 71/121 (58%), Positives = 92/121 (76%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L +YK CA WV
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGLVG II RFEQ+GF
Sbjct: 15 GVQRGLVGEIIKRFEQKGF 33
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 154 bits (390), Expect = 8e-38
Identities = 70/121 (57%), Positives = 90/121 (74%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+ +K +Q + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L +YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEISLWFQPEELVDYKSCAQNWIY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 35.8 bits (81), Expect = 0.052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGLVG II RFEQ+GF
Sbjct: 15 GVQRGLVGEIIKRFEQKGF 33
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 154 bits (390), Expect = 8e-38
Identities = 71/121 (58%), Positives = 90/121 (74%)
Frame = +2
Query: 53 GFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEYMLSGPVVCMVWQGYEMVKIGRALL 232
GF+L+A+K M+ + LL+ HY +LKD+PFF L++YM SGPVV MVW+G +VK GR +L
Sbjct: 32 GFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVML 91
Query: 233 GATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAKREIGLWFTAKDLGEYKLCADIWVQ 412
G T P DS PGTIRGDF GRNI+HGSDSVESA++EI LWF ++L YK CA W+
Sbjct: 92 GETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIY 151
Query: 413 E 415
E
Sbjct: 152 E 152
Score = 35.4 bits (80), Expect = 0.068
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 1 GVQRGLVGTIITRFEQRGF 57
GVQRGL+G II RFEQ+GF
Sbjct: 15 GVQRGLIGEIIKRFEQKGF 33
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,151,675
Number of Sequences: 369166
Number of extensions: 1271441
Number of successful extensions: 3578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3545
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)