Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I06
(679 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (ND... 203 4e-52
sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (ND... 199 6e-51
sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) ... 194 1e-49
sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A... 194 2e-49
sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A... 193 4e-49
sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A... 192 7e-49
sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B... 191 1e-48
sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) ... 191 1e-48
sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B... 191 2e-48
sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (N... 191 2e-48
>sp|Q8TFN0|NDK_EMENI Nucleoside diphosphate kinase (NDK) (NDP kinase) (AnNDK)
Length = 153
Score = 203 bits (516), Expect = 4e-52
Identities = 94/147 (63%), Positives = 116/147 (78%)
Frame = +3
Query: 6 EAYIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLI 185
+ +I +KPDGVQRGLVG II+RFE RGFKL A+K+ P + LLE HY +LK+KPFFP L+
Sbjct: 5 QTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLV 64
Query: 186 EYMLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVES 365
YMLSGP+V MVW+G ++VK GR +LGAT P+ S PGTIRGDFA GRN+ HGSDSVES
Sbjct: 65 TYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVES 124
Query: 366 AKREIGLWFTAKDLGEYKLCADIWVQE 446
AK+EIGLWFT +++ YKL A W+ E
Sbjct: 125 AKKEIGLWFTPEEIQNYKLNAFGWIYE 151
>sp|P27950|NDK_GINCI Nucleoside diphosphate kinase (NDK) (NDP kinase)
Length = 151
Score = 199 bits (506), Expect = 6e-51
Identities = 94/145 (64%), Positives = 112/145 (77%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I VKPDGVQR +VG +I RFEQ+GFKL+A+K +Q K LLE HY EL DKPF+PKLI+Y
Sbjct: 7 FIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKY 66
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESAK
Sbjct: 67 MSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAK 126
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EI LWF ++L EY+ CA W+ E
Sbjct: 127 KEISLWFKREELVEYQNCAQDWIYE 151
>sp|P19804|NDKB_RAT Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)
Length = 152
Score = 194 bits (494), Expect = 1e-49
Identities = 90/145 (62%), Positives = 114/145 (78%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++Y
Sbjct: 8 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA+
Sbjct: 68 MNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EIGLWF ++L +YK CA WV E
Sbjct: 128 KEIGLWFKPEELIDYKSCAHDWVYE 152
>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (nm23-C1)
Length = 152
Score = 194 bits (493), Expect = 2e-49
Identities = 90/145 (62%), Positives = 113/145 (77%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQR LVG II RFEQ+GF+LIA+K++Q + LL+ HY +LKD+PFF L++Y
Sbjct: 8 FIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA+
Sbjct: 68 MQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EIGLWF ++L +YK CA W+ E
Sbjct: 128 KEIGLWFQPEELVDYKSCAQNWIYE 152
>sp|P15531|NDKA_HUMAN Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor nm23) (nm23-H1) (Granzyme A-activated
DNase) (GAAD)
Length = 152
Score = 193 bits (490), Expect = 4e-49
Identities = 89/145 (61%), Positives = 111/145 (76%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGLVG II RFEQ+GF+L+ +K MQ + LL+ HY +LKD+PFF L++Y
Sbjct: 8 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA+
Sbjct: 68 MHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EIGLWF ++L +Y CA W+ E
Sbjct: 128 KEIGLWFHPEELVDYTSCAQNWIYE 152
>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23) (NDPK-A) (nm23-M1)
Length = 152
Score = 192 bits (488), Expect = 7e-49
Identities = 88/145 (60%), Positives = 111/145 (76%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGLVG II RFEQ+GF+L+ +K +Q + LL+ HY +LKD+PFF L++Y
Sbjct: 8 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSV+SA+
Sbjct: 68 MHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EI LWF ++L EYK CA W+ E
Sbjct: 128 KEISLWFQPEELVEYKSCAQNWIYE 152
>sp|Q01768|NDKB_MOUSE Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-M2)
(P18)
Length = 152
Score = 191 bits (486), Expect = 1e-48
Identities = 89/145 (61%), Positives = 113/145 (77%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++Y
Sbjct: 8 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA+
Sbjct: 68 MNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EI LWF ++L +YK CA WV E
Sbjct: 128 KEIHLWFKPEELIDYKSCAHDWVYE 152
>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A (NDK A) (NDP kinase A) (Tumor
metastatic process-associated protein) (Metastasis
inhibition factor NM23)
Length = 152
Score = 191 bits (486), Expect = 1e-48
Identities = 88/145 (60%), Positives = 111/145 (76%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGLVG II RFEQ+GF+L+ +K +Q + LL+ HY +LKD+PFF L++Y
Sbjct: 8 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA+
Sbjct: 68 MHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EI LWF ++L +YK CA W+ E
Sbjct: 128 KEISLWFQPEELVDYKSCAQNWIYE 152
>sp|P22392|NDKB_HUMAN Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (nm23-H2)
(C-myc purine-binding transcription factor PUF)
Length = 152
Score = 191 bits (485), Expect = 2e-48
Identities = 88/145 (60%), Positives = 113/145 (77%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGLVG II RFEQ+GF+L+A+K ++ ++ L+ HY +LKD+PFFP L++Y
Sbjct: 8 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSV+SA+
Sbjct: 68 MNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EI LWF ++L +YK CA WV E
Sbjct: 128 KEISLWFKPEELVDYKSCAHDWVYE 152
>sp|P52174|NDKA_BOVIN Nucleoside diphosphate kinase NBR-A (NDK NBR-A) (NDP kinase NBR-A)
Length = 152
Score = 191 bits (485), Expect = 2e-48
Identities = 88/145 (60%), Positives = 111/145 (76%)
Frame = +3
Query: 12 YIMVKPDGVQRGLVGTIITRFEQRGFKLIAIKMMQPDKKLLEVHYQELKDKPFFPKLIEY 191
+I +KPDGVQRGL+G II RFEQ+GF+L+A+K M+ + LL+ HY +LKD+PFF L++Y
Sbjct: 8 FIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKY 67
Query: 192 MLSGPVVCMVWQGYEMVKIGRALLGATRPIDSLPGTIRGDFAQVAGRNIVHGSDSVESAK 371
M SGPVV MVW+G +VK GR +LG T P DS PGTIRGDF GRNI+HGSDSVESA+
Sbjct: 68 MHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAE 127
Query: 372 REIGLWFTAKDLGEYKLCADIWVQE 446
+EI LWF ++L YK CA W+ E
Sbjct: 128 KEIALWFHPEELVNYKSCAQNWIYE 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,677,151
Number of Sequences: 369166
Number of extensions: 1745091
Number of successful extensions: 4139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4101
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)