DrC_00915
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00915 (1742 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 207 1e-52 sp|Q9DCP2|S38A3_MOUSE System N amino acid transporter 1 (SN... 44 0.001 sp|Q99624|S38A3_HUMAN System N amino acid transporter 1 (SN... 44 0.001 sp|Q9JHZ9|S38A3_RAT System N amino acid transporter 1 (SN1)... 44 0.001 sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein (T... 43 0.003 sp|Q5L5E1|G6PI_CHLAB Glucose-6-phosphate isomerase (GPI) (P... 36 0.40 sp|Q822E7|G6PI_CHLCV Glucose-6-phosphate isomerase (GPI) (P... 35 0.69 sp|P34479|YMJ2_CAEEL Hypothetical protein F59B2.2 in chromo... 34 1.5 sp|P43993|Y392_HAEIN Hypothetical protein HI0392 33 2.0 sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid trans... 33 2.6
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV Length = 615 Score = 207 bits (526), Expect = 1e-52 Identities = 109/276 (39%), Positives = 153/276 (55%) Frame = +2 Query: 815 FDKLWNQTHTVPFWLLIVVLPLISIKSPTFFTKFNALGTISVVYLFLLVIIKAVIWGIHI 994 FDK W TVP +L + PL++ KSPTFFTKFN LGTISV+YL + V K + G+++ Sbjct: 339 FDKFWTLRGTVPIYLAFALFPLMNFKSPTFFTKFNVLGTISVMYLLMFVFSKLLECGVNM 398 Query: 995 DFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVA 1174 DF S+ Y+ A + F L+G +L++FIHNA+ +I+R+Q PENN RDL I Y VA Sbjct: 399 DFSNPKSIHYVQLANMHFPALSGTLTLSYFIHNAVLTILRNQKHPENNARDLSIGYCLVA 458 Query: 1175 ATYLGIGVIFYVTFPLSKDCIXXXXXXXXXXXXXXAFIGRIFLFFQILTVFPLLMYILRS 1354 Y+ IG F+ FP+ + CI + R+FL FQ++TV PLLM+++RS Sbjct: 459 FCYVFIGFTFFAAFPVQRSCISDNFLNNFGAGDVLSSTARLFLLFQMITVLPLLMFLVRS 518 Query: 1355 QFMYFFFKKFYPSWXXXXXXXXXXXXXXXXFSIFLPHIGEIARFSGSICGLVYMITLPAL 1534 Q Y F + +P F+ F P++G I R+ GSI GLVY+ LPA+ Sbjct: 519 QLFYAIFGQTWPGAIRVIILNVLLIAVAVGFATFYPNVGSILRYVGSISGLVYVFALPAM 578 Query: 1535 VKIRRMQKEGKLTVWSFXXXXXXXXXXXXNFLGQFV 1642 V I++ + G LT N + QFV Sbjct: 579 VYIKQSEAAGTLTPMKKYAHYGIIVIGVANLIAQFV 614
Score = 116 bits (291), Expect = 2e-25
Identities = 63/129 (48%), Positives = 83/129 (64%), Gaps = 9/129 (6%)
Frame = +1
Query: 136 RYRYYLRLGVP----VIPDHVLPSRFFVLLPSQTTPP--GTQSSFITIFSIWNTMMGTSL 297
RYR Y RL +PDHVLP F +LP + G Q S +TIFSIWNTMMGTSL
Sbjct: 122 RYRLYNRLDPGGEHLTMPDHVLPPNLFSILPFEELKDVSGKQGSIVTIFSIWNTMMGTSL 181
Query: 298 LSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVLKS---TENLPLEPGRTAFTSDFSDAC 468
L+MPWA+QQ+G LGI +M+ +A + FYTAY+V++S ++L ++P ++FSD C
Sbjct: 182 LAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLSVDP----LLAEFSDVC 237
Query: 469 KFYLGRPGE 495
K GR GE
Sbjct: 238 KSLFGRIGE 246
>sp|Q9DCP2|S38A3_MOUSE System N amino acid transporter 1 (SN1) (N-system amino acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 43.9 bits (102), Expect = 0.001 Identities = 22/65 (33%), Positives = 41/65 (63%) Frame = +1 Query: 214 PSQTTPPGTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYL 393 P T G S +++F++ N +MG+ +L + +A+ +G L +FL+ VA L+ Y+ +L Sbjct: 56 PHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHL 115 Query: 394 VLKST 408 +LKS+ Sbjct: 116 LLKSS 120
>sp|Q99624|S38A3_HUMAN System N amino acid transporter 1 (SN1) (N-system amino acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 43.9 bits (102), Expect = 0.001 Identities = 22/65 (33%), Positives = 41/65 (63%) Frame = +1 Query: 214 PSQTTPPGTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYL 393 P T G S +++F++ N +MG+ +L + +A+ +G L +FL+ VA L+ Y+ +L Sbjct: 57 PHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHL 116 Query: 394 VLKST 408 +LKS+ Sbjct: 117 LLKSS 121
>sp|Q9JHZ9|S38A3_RAT System N amino acid transporter 1 (SN1) (N-system amino acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 43.9 bits (102), Expect = 0.001 Identities = 22/65 (33%), Positives = 41/65 (63%) Frame = +1 Query: 214 PSQTTPPGTQSSFITIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYL 393 P T G S +++F++ N +MG+ +L + +A+ +G L +FL+ VA L+ Y+ +L Sbjct: 56 PHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHL 115 Query: 394 VLKST 408 +LKS+ Sbjct: 116 LLKSS 120
>sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein (Tyrosine permease) sp|P0AAD5|TYRP_SHIFL Tyrosine-specific transport protein (Tyrosine permease) Length = 403 Score = 43.1 bits (100), Expect = 0.003 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +1 Query: 256 TIFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVLKSTENLPLEPGR 435 ++F + T +G +L+MP A GF++ + L+I + L YTA L+L+ +++P + G Sbjct: 8 SVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTG- 66 Query: 436 TAFTSDFSDACKFYLGRPGE 495 K YLGR G+ Sbjct: 67 ------LGTLAKRYLGRYGQ 80
>sp|Q5L5E1|G6PI_CHLAB Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 530 Score = 35.8 bits (81), Expect = 0.40 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 14/135 (10%) Frame = +1 Query: 61 YSAYSANPDNVSDSEISVNWSASL----SRYRYYLRLGV--PVIPDHVLPSRF-----FV 207 Y + +PDN ++ ++ S +L S+ L V I DH L F+ Sbjct: 174 YFVSNIDPDNAAEVLQEIDCSKTLVVTVSKSGTTLETAVNEEFIADHFLKQGLHFRDHFI 233 Query: 208 LLPSQTTPPGTQSSFITIFSIWNTMMGT-SLLSMPWAIQQSGFALG--IFLMILVAGLAF 378 + + +P +S ++ +F IW+++ G S SM + GFA G +F +L A Sbjct: 234 AVTCEGSPMDDRSKYLEVFHIWDSIGGRYSSTSMVGGVVL-GFAYGFDVFFQLLEGAAAM 292 Query: 379 YTAYLVLKSTENLPL 423 A L + +ENLP+ Sbjct: 293 DLAALAPQMSENLPM 307
>sp|Q822E7|G6PI_CHLCV Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 527 Score = 35.0 bits (79), Expect = 0.69 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%) Frame = +1 Query: 61 YSAYSANPDNVSDSEISVNWSASL----SRYRYYLRLGV--PVIPDHVLPSRF-----FV 207 Y + +PDN ++ ++ + +L S+ L V ++ DH L F+ Sbjct: 174 YFVSNVDPDNAAEVLQEIDCAKTLVVTVSKSGTTLETAVNEELLADHFLKQGLHFQDHFI 233 Query: 208 LLPSQTTPPGTQSSFITIFSIWNTMMGT-SLLSMPWAIQQSGFALG--IFLMILVAGLAF 378 + + +P S ++ +F IW+++ G S SM + GFA G +FL +L + Sbjct: 234 AVTCEGSPMDDTSKYLEVFHIWDSIGGRYSSTSMVGGVVL-GFAYGFDVFLQLLEGAASM 292 Query: 379 YTAYLVLKSTENLPL 423 A L + +ENLPL Sbjct: 293 DLAALEPRMSENLPL 307
>sp|P34479|YMJ2_CAEEL Hypothetical protein F59B2.2 in chromosome III Length = 460 Score = 33.9 bits (76), Expect = 1.5 Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +1 Query: 229 PPGTQSSFIT----IFSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLV 396 PP IT + ++ +M S+P+A + G + + ++AGL +Y +++ Sbjct: 29 PPARSGDVITPTRAVLTLSKSMFNAGCFSLPYAWKLGGLWVSFVMSFVIAGLNWYGNHIL 88 Query: 397 LKSTENLPLEPGRTA 441 ++++++L + R+A Sbjct: 89 VRASQHLAKKSDRSA 103
>sp|P43993|Y392_HAEIN Hypothetical protein HI0392 Length = 245 Score = 33.5 bits (75), Expect = 2.0 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 6/135 (4%) Frame = +2 Query: 800 MRKSVFDKLWNQTHTVPFWLLIV------VLPLISIKSPTFFTKFNALGTISVVYLFLLV 961 + + FD N+ + W L V + PLI I + F + L I+++ F+L+ Sbjct: 83 LTQGYFDLSANENPVLHIWSLAVEGQYYLIFPLILILAYKKFREVKVLFIITLILFFILL 142 Query: 962 IIKAVIWGIHIDFYFLTSLSYIPNARVTFIVLTGVGSLAFFIHNAIHSIVRSQAKPENNT 1141 V + + ++ Y+ N R ++ VGSL HN + + S K NN Sbjct: 143 ATSFVSANFYKEVLHQPNIYYLSNLRFPELL---VGSLLAIYHNLSNKVQLS--KQVNNI 197 Query: 1142 RDLLIAYVCVAATYL 1186 +L + + +L Sbjct: 198 LAILSTLLLFSCLFL 212
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter (GABA and glycine transporter) (Vesicular GABA transporter) (hVIAAT) (Solute carrier family 32 member 1) Length = 525 Score = 33.1 bits (74), Expect = 2.6 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +1 Query: 262 FSIWNTMMGTSLLSMPWAIQQSGFALGIFLMILVAGLAFYTAYLVL 399 +++ N + G +L +P+AI G+ LG+FL+I A + YT +++ Sbjct: 123 WNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILI 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,727,023
Number of Sequences: 369166
Number of extensions: 4228330
Number of successful extensions: 10012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9997
length of database: 68,354,980
effective HSP length: 116
effective length of database: 46,925,720
effective search space used: 21773534080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
