Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I13
(566 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 93 5e-19
sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-... 31 1.9
sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide sy... 30 3.2
sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thyla... 30 3.2
sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein 29 7.1
sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Tr... 29 7.1
sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-... 29 7.1
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 92.8 bits (229), Expect = 5e-19
Identities = 50/154 (32%), Positives = 73/154 (47%)
Frame = +2
Query: 5 YLGIGVIFYVTFPLSKDCIXXXXXXXXXXXXXXAFIGRIFLFFQILTVFPLLMYILRSQF 184
Y+ IG F+ FP+ + CI + R+FL FQ++TV PLLM+++RSQ
Sbjct: 461 YVFIGFTFFAAFPVQRSCISDNFLNNFGAGDVLSSTARLFLLFQMITVLPLLMFLVRSQL 520
Query: 185 MYFFFKKFYPSWXXXXXXXXXXXXXXXXFSIFLPHIGEIARFSGSICGLVYMITLPALVK 364
Y F + +P F+ F P++G I R+ GSI GLVY+ LPA+V
Sbjct: 521 FYAIFGQTWPGAIRVIILNVLLIAVAVGFATFYPNVGSILRYVGSISGLVYVFALPAMVY 580
Query: 365 IRRMQKEGKLTVWSFXXXXXXXXXXXXNFLGQFV 466
I++ + G LT N + QFV
Sbjct: 581 IKQSEAAGTLTPMKKYAHYGIIVIGVANLIAQFV 614
>sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 31.2 bits (69), Expect = 1.9
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 382 GRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYKPLGSIYRIFILFLLLGFEKSTD 546
G+ LVF+F YR + + + V + PLG Y +FI+F L+GF + +
Sbjct: 119 GQIFGGLVFYFVYRSEGFSDTLDLFGVAEV---PLGIFYGVFIIFWLVGFSNAVN 170
>sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 419
Score = 30.4 bits (67), Expect = 3.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 388 KTNSLVFHFTYRFDCYWSSQFSRP 459
KT+S HF Y FDC+WS Q P
Sbjct: 221 KTDSSELHF-YVFDCFWSDQLQMP 243
>sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thylakoid membrane protein)
(Photosystem II protein D1)
Length = 360
Score = 30.4 bits (67), Expect = 3.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +1
Query: 400 LVFHFTYRFDCYWSSQFS-------RP-VCVLFYKPLGSIYRIFILF 516
+VFHF CY Q+ RP +CV + PL + + +F+++
Sbjct: 115 VVFHFLLGISCYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIY 161
>sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein
Length = 73
Score = 29.3 bits (64), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 427 DCYWSSQFSRPVCVLFYKPLGSIYRIFILFLL 522
D YW RP+C ++ + Y I++L L+
Sbjct: 16 DFYWDFSMIRPICTIWTYSISCTYGIYLLILI 47
>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Transcription factor PI)
Length = 208
Score = 29.3 bits (64), Expect = 7.1
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 414 KMKDQTVSFPSFCILLIFTNAGKVIIYTKPQMDPLNRAISPMCGKNIENKTQISNKAMW 238
K K+ TV + L+IF + GK+I Y P MD G ++ ++S K +W
Sbjct: 31 KAKEITVLCDAKVALIIFASNGKMIDYCCPSMD---------LGAMLDQYQKLSGKKLW 80
>sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 364 NKKNAEGRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYK---PLGSIYRIFILFLLLGFE 534
+K+ G+ ++F+ YR + Y P + F+ PLG Y +F +F L+GF
Sbjct: 114 SKQKLLGQIIGGIIFYLVYRSEGY-------PGTLNFFGIELPLGLFYGVFAIFWLVGFS 166
Query: 535 KSTD 546
+ +
Sbjct: 167 NAVN 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,162,049
Number of Sequences: 369166
Number of extensions: 1323386
Number of successful extensions: 2953
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2951
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)