Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N06
(675 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chrom... 132 8e-31
sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-... 31 2.6
sp|P21559|P34_RICRI Protein p34 30 4.4
sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide sy... 30 4.4
sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thyla... 30 4.4
sp|Q8YWC2|GPDA_ANASP Glycerol-3-phosphate dehydrogenase [NA... 30 4.4
sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein 29 9.8
sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Tr... 29 9.8
sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-... 29 9.8
sp|Q929Y0|MRAY_LISIN Phospho-N-acetylmuramoyl-pentapeptide-... 29 9.8
>sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV
Length = 615
Score = 132 bits (332), Expect = 8e-31
Identities = 70/191 (36%), Positives = 100/191 (52%)
Frame = +3
Query: 3 SLAFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSKDCIXXXX 182
+L++FIHNA+ +I+R+Q PENN RDL I Y VA Y+ IG F+ FP+ + CI
Sbjct: 424 TLSYFIHNAVLTILRNQKHPENNARDLSIGYCLVAFCYVFIGFTFFAAFPVQRSCISDNF 483
Query: 183 XXXXXXXXXXAFIGRIFLFFQILTVFPLLMYILRSQFMYFFFKKFYPSWXXXXXXXXXXX 362
+ R+FL FQ++TV PLLM+++RSQ Y F + +P
Sbjct: 484 LNNFGAGDVLSSTARLFLLFQMITVLPLLMFLVRSQLFYAIFGQTWPGAIRVIILNVLLI 543
Query: 363 XXXXXFSIFLPHIGEIARFSGSICGLVYMITLPALVKIRRMQKEGKLTVWSFXXXXXXXX 542
F+ F P++G I R+ GSI GLVY+ LPA+V I++ + G LT
Sbjct: 544 AVAVGFATFYPNVGSILRYVGSISGLVYVFALPAMVYIKQSEAAGTLTPMKKYAHYGIIV 603
Query: 543 XXXXNFLGQFV 575
N + QFV
Sbjct: 604 IGVANLIAQFV 614
>sp|O07107|MRAY_ENTFA Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 31.2 bits (69), Expect = 2.6
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 491 GRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYKPLGSIYRIFILFLLLGFEKSTD 655
G+ LVF+F YR + + + V + PLG Y +FI+F L+GF + +
Sbjct: 119 GQIFGGLVFYFVYRSEGFSDTLDLFGVAEV---PLGIFYGVFIIFWLVGFSNAVN 170
>sp|P21559|P34_RICRI Protein p34
Length = 301
Score = 30.4 bits (67), Expect = 4.4
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 9 AFFIHNAIHSIVRSQAKPENNTRDLLIAYVCVAATYLGIGVIFYVTFPLSK 161
AFF+ + + + KPEN + + YVC+ +L I ++FY T+ + K
Sbjct: 95 AFFVGFSSVKSLFEKTKPENISDGTTVMYVCI---FLTIILVFYQTYVIKK 142
>sp|P35970|DNLI_ASFB7 DNA ligase (Polydeoxyribonucleotide synthase [ATP])
Length = 419
Score = 30.4 bits (67), Expect = 4.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 497 KTNSLVFHFTYRFDCYWSSQFSRP 568
KT+S HF Y FDC+WS Q P
Sbjct: 221 KTDSSELHF-YVFDCFWSDQLQMP 243
>sp|P04996|PSB1_SYNP7 Photosystem Q(B) protein (32 kDa thylakoid membrane protein)
(Photosystem II protein D1)
Length = 360
Score = 30.4 bits (67), Expect = 4.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +2
Query: 509 LVFHFTYRFDCYWSSQFS-------RP-VCVLFYKPLGSIYRIFILF 625
+VFHF CY Q+ RP +CV + PL + + +F+++
Sbjct: 115 VVFHFLLGISCYMGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIY 161
>sp|Q8YWC2|GPDA_ANASP Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent
glycerol-3-phosphate dehydrogenase)
Length = 307
Score = 30.4 bits (67), Expect = 4.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 271 ISNGNTVNIWKKRNIRPMKANKSFCDKLFSKLS*MQSLERGNVT*NITPIPRYVAATHT 95
I+NGN V +W +R + A D + S +S E + ++TP P + T T
Sbjct: 23 IANGNRVRVWSRRGSETLSAVLQGADIVLSAISMKGVREVASQIQSLTPSPETIFVTAT 81
>sp|P19281|YOR6_TTV1 Hypothetical 8.9 kDa protein
Length = 73
Score = 29.3 bits (64), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 536 DCYWSSQFSRPVCVLFYKPLGSIYRIFILFLL 631
D YW RP+C ++ + Y I++L L+
Sbjct: 16 DFYWDFSMIRPICTIWTYSISCTYGIYLLILI 47
>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA (Transcription factor PI)
Length = 208
Score = 29.3 bits (64), Expect = 9.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 523 KMKDQTVSFPSFCILLIFTNAGKVIIYTKPQMDPLNRAISPMCGKNIENKTQISNKAMW 347
K K+ TV + L+IF + GK+I Y P MD G ++ ++S K +W
Sbjct: 31 KAKEITVLCDAKVALIIFASNGKMIDYCCPSMD---------LGAMLDQYQKLSGKKLW 80
>sp|O07668|MRAY_ENTHR Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 321
Score = 29.3 bits (64), Expect = 9.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 473 NKKNAEGRKTNSLVFHFTYRFDCYWSSQFSRPVCVLFYK---PLGSIYRIFILFLLLGFE 643
+K+ G+ ++F+ YR + Y P + F+ PLG Y +F +F L+GF
Sbjct: 114 SKQKLLGQIIGGIIFYLVYRSEGY-------PGTLNFFGIELPLGLFYGVFAIFWLVGFS 166
Query: 644 KSTD 655
+ +
Sbjct: 167 NAVN 170
>sp|Q929Y0|MRAY_LISIN Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 324
Score = 29.3 bits (64), Expect = 9.8
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Frame = +2
Query: 359 ITYLCFIF---NIFAAHWRNSSV*RVHLRFGVYDHFARIGE-------NKKNAEGRKTNS 508
I++L F F + AA W + G D + ++ + +K+ G+ S
Sbjct: 65 ISFLIFSFISGEVSAATWLLFITLALFGALGFLDDYIKVVQKRNLGLTSKQKFLGQVAIS 124
Query: 509 LVFHFTYRFDCYWSSQFSRPVCVLFYKP---LGSIYRIFILFLLLGFEKSTD 655
++F+ Y F S F+ + + F LG + IFILF L+GF + +
Sbjct: 125 ILFYLVYHF-----SDFAETLKIPFTNTEIDLGWFFIIFILFWLVGFSNAVN 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,030,529
Number of Sequences: 369166
Number of extensions: 1618259
Number of successful extensions: 3715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3704
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)